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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100784219   DNA-directed RNA polymerase II subunit RPB11-like 
 gma-r.7   100784219   DNA-directed RNA polymerase II subunit RPB11-like 
 gma-u.5   100527865   DNA-directed RNA polymerases II, IV and V subunit 11 
 mtr-u.5   25491968   DNA-directed RNA polymerases II, IV and V subunit 11 
 ppo-u.5   7475018   DNA-directed RNA polymerases II, IV and V subunit 11 
 ath-u.5   NRPB11   DNA-directed RNA polymerase, RBP11-like protein 
 vvi-u.5   100259467   DNA-directed RNA polymerases II, IV and V subunit 11 
 sly-u.5   101244156   DNA-directed RNA polymerases II, IV and V subunit 11 
 osa-u.5   4342517   DNA-directed RNA polymerases II, IV and V subunit 11 
 zma-u.5   103627418   DNA-directed RNA polymerases II, IV and V subunit 11 

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Top 50 coexpressed genes to 100784219 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100784219 (gma-u.5 coexpression data)

CoexMap"100784219"


gmaLOC100784219 | Entrez gene ID : 100784219      
Species gma mtr ppo ath vvi sly osa zma hvu bna cit bra ghi sbi bdi nta tae cre sot
Paralog 3 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03020 [list] [network] RNA polymerase (81 genes)
gmx03420 [list] [network] Nucleotide excision repair (129 genes)
GO BP
GO:0006366 [list] [network] transcription by RNA polymerase II  (130 genes)  IEA  
GO CC
GO:0005665 [list] [network] RNA polymerase II, core complex  (38 genes)  IEA  
GO MF
GO:0046983 [list] [network] protein dimerization activity  (899 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (3517 genes)  IEA  
Protein NP_001240124.1 [sequence] [blastp]
XP_040863008.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_001240124.1)
chlo 5,  nucl 3,  mito 2  (predict for XP_040863008.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001240124.1)
chlo 8  (predict for XP_040863008.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100784219
gma-r.7
for
100784219
gma-u.5
for
100527865
mtr-u.5
for
25491968
ppo-u.5
for
7475018
ath-u.5
for
NRPB11
vvi-u.5
for
100259467
sly-u.5
for
101244156
osa-u.5
for
4342517
zma-u.5
for
103627418


Ortholog ID: 3817
Species gma gma mtr ppo ath bra vvi ghi ghi bna bna cit sly sot nta nta osa tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC100784219 LOC100527865 LOC25491968 LOC7475018 NRPB11 LOC103841143 LOC100259467 LOC107915795 LOC107950661 LOC106445664 LOC106367853 LOC102612486 LOC101244156 LOC102581010 LOC107792672 LOC107770430 LOC4342517 LOC123114249 LOC123121940 LOC123399444 LOC123426559 LOC8080291 LOC8054480 LOC100828839 LOC100839628 CHLRE_13g565550v5
Function* DNA-directed RNA polymerase II subunit RPB11-like DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerase, RBP11-like protein DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11-like DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11-like DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11-like DNA-directed RNA polymerases II, IV and V subunit 11-like DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 DNA-directed RNA polymerases II, IV and V subunit 11 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 2
gma03040 Spliceosome 2
gma00510 N-Glycan biosynthesis 2
gma00513 Various types of N-glycan biosynthesis 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
gma03040 Spliceosome 3
gma03008 Ribosome biogenesis in eukaryotes 3
gma04016 MAPK signaling pathway - plant 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 13
mtr03020 RNA polymerase 2
mtr03420 Nucleotide excision repair 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04136 Autophagy - other 3
ppo03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 4
ath00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03020 RNA polymerase 2
vvi03420 Nucleotide excision repair 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 11
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 11
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 5
cit03018 RNA degradation 3
cit03420 Nucleotide excision repair 2
cit03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 4
sly04120 Ubiquitin mediated proteolysis 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 9
sot00190 Oxidative phosphorylation 3
sot00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 4
nta03420 Nucleotide excision repair 4
nta03050 Proteasome 3
nta00190 Oxidative phosphorylation 3
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 4
nta03420 Nucleotide excision repair 4
nta03050 Proteasome 3
nta00190 Oxidative phosphorylation 3
nta00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 9
tae03420 Nucleotide excision repair 9
tae03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
sbi04146 Peroxisome 3
sbi00053 Ascorbate and aldarate metabolism 2
sbi00480 Glutathione metabolism 2
sbi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 9
bdi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04120 Ubiquitin mediated proteolysis 4
cre03420 Nucleotide excision repair 3
cre04141 Protein processing in endoplasmic reticulum 3
cre03020 RNA polymerase 2
cre03083 Polycomb repressive complex 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100784219 100527865 25491968 7475018 824372 103841143 100259467 107915795 107950661 106445664 106367853 102612486 101244156 102581010 107792672 107770430 4342517 123114249 123121940 123399444 123426559 8080291 8054480 100828839 100839628 5719044
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