ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bdi-r.1	100846624	homeobox protein knotted-1-like 13
bdi-r.1	100829302	homeobox protein knotted-1-like 2
bdi-r.1	100834996	homeobox protein knotted-1-like 11
bdi-r.1	100839642	homeobox protein knotted-1-like 3
tae-r.2	123114519	homeobox protein knotted-1-like 11
tae-r.2	123105937	homeobox protein knotted-1-like 3
tae-r.2	123102758	homeobox protein knotted-1-like 11
hvu-r.1	123408764	homeobox protein knotted-1-like 11
hvu-r.1	123402147	homeobox protein knotted-1-like 2
hvu-r.1	123449873	homeobox protein knotted-1-like 3
osa-u.5	4345191	homeobox protein knotted-1-like 13
osa-u.5	4328520	homeobox protein knotted-1-like 2
osa-u.5	4331449	homeobox protein knotted-1-like 3
zma-u.5	732756	KNOX family class 2 homeodomain protein
zma-u.5	103638717	homeobox protein knotted-1-like 11
zma-u.5	100284833	uncharacterized LOC100284833
sbi-r.1	8077964	homeobox protein knotted-1-like 3
sbi-r.1	8077633	homeobox protein knotted-1-like 2
sbi-r.1	110430820	homeobox protein knotted-1-like 11
ath-u.5	KNAT7	homeobox knotted-like protein
ath-u.5	KNAT5	homeobox protein knotted-1-like 5
ath-u.5	KNAT4	homeobox protein knotted-1-like 4
gma-u.5	100803673	homeobox protein knotted-1-like LET12
gma-u.5	100803130	homeobox protein HD1
gma-u.5	100803034	homeobox protein knotted-1-like LET12
sly-u.5	T12	homeobox protein knotted-1-like LET12
sly-u.5	101249149	homeobox protein knotted-1-like LET12
sly-u.5	101261052	homeobox protein knotted-1-like 3
bra-r.6	103854769	homeobox protein knotted-1-like 3
bra-r.6	103862107	homeobox protein knotted-1-like 5
bra-r.6	103874387	homeobox protein knotted-1-like 3
vvi-u.5	100254363	homeobox protein knotted-1-like 3
vvi-u.5	100246520	homeobox protein knotted-1-like 13
vvi-u.5	100259923	homeobox protein HD1
ppo-u.5	7455658	homeobox protein knotted-1-like LET12
ppo-u.5	7458397	homeobox protein knotted-1-like 3
ppo-u.5	7489476	homeobox protein knotted-1-like LET12
mtr-u.5	25488391	homeobox protein knotted-1-like 4
mtr-u.5	11437517	homeobox protein HD1
mtr-u.5	11426748	homeobox protein knotted-1-like 3
ghi-r.1	107906859	homeobox protein knotted-1-like 3
ghi-r.1	107907313	homeobox protein knotted-1-like 3
ghi-r.1	107926979	homeobox protein HD1
bna-r.1	111204267	homeobox protein knotted-1-like 4
bna-r.1	111205032	homeobox protein HD1
bna-r.1	106394496	homeobox protein HD1
sot-r.1	102592058	homeobox protein knotted-1-like LET12
sot-r.1	102600529	homeobox protein HD1
sot-r.1	102584843	homeobox protein knotted-1-like LET12
cit-r.1	102614949	homeobox protein knotted-1-like 3
cit-r.1	102617560	homeobox protein knotted-1-like LET12
cit-r.1	102627657	homeobox protein HD1
nta-r.1	107784320	homeobox protein knotted-1-like LET12
nta-r.1	107787343	homeobox protein HD1
nta-r.1	107780666	homeobox protein HD1
cre-r.1	CHLRE_08g375400v5	uncharacterized protein

Top 50 coexpressed genes to 100846624 (bdi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100846624 (bdi-r.1 coexpression data)

CoexMap"100846624"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(1579 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(2880 genes)

IEA

GO MF

GO:0003677 [list] [network] DNA binding

(1744 genes)

IEA

Protein

XP_003573667.3 [sequence] [blastp]
XP_010234555.2 [sequence] [blastp]
XP_010234556.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for XP_003573667.3)
nucl 10	(predict for XP_010234555.2)
nucl 10	(predict for XP_010234556.2)

Subcellular
localization
TargetP

other 5, scret 4	(predict for XP_003573667.3)
other 5, scret 4	(predict for XP_010234555.2)
other 5, scret 4	(predict for XP_010234556.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100846624	bdi-r.1 for 100829302	bdi-r.1 for 100834996	bdi-r.1 for 100839642	tae-r.2 for 123114519	tae-r.2 for 123105937	tae-r.2 for 123102758	hvu-r.1 for 123408764	hvu-r.1 for 123402147	hvu-r.1 for 123449873	osa-u.5 for 4345191	osa-u.5 for 4328520	osa-u.5 for 4331449	zma-u.5 for 732756	zma-u.5 for 103638717	zma-u.5 for 100284833	sbi-r.1 for 8077964	sbi-r.1 for 8077633	sbi-r.1 for 110430820	ath-u.5 for KNAT7	ath-u.5 for KNAT5	ath-u.5 for KNAT4	gma-u.5 for 100803673	gma-u.5 for 100803130	gma-u.5 for 100803034	sly-u.5 for T12	sly-u.5 for 101249149	sly-u.5 for 101261052	bra-r.6 for 103854769	bra-r.6 for 103862107	bra-r.6 for 103874387	vvi-u.5 for 100254363	vvi-u.5 for 100246520	vvi-u.5 for 100259923	ppo-u.5 for 7455658	ppo-u.5 for 7458397	ppo-u.5 for 7489476	mtr-u.5 for 25488391	mtr-u.5 for 11437517	mtr-u.5 for 11426748	ghi-r.1 for 107906859	ghi-r.1 for 107907313	ghi-r.1 for 107926979	bna-r.1 for 111204267	bna-r.1 for 111205032	bna-r.1 for 106394496	sot-r.1 for 102592058	sot-r.1 for 102600529	sot-r.1 for 102584843	cit-r.1 for 102614949	cit-r.1 for 102617560	cit-r.1 for 102627657	nta-r.1 for 107784320	nta-r.1 for 107787343	nta-r.1 for 107780666	cre-r.1 for CHLRE_08g375400v5

Ortholog

Ortholog ID: 585

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

KNAT7

KNAT5

KNAT3

T12

THox2

Function^*

homeobox protein knotted-1-like 13

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like 11

homeobox protein knotted-1-like 3

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like 11

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like 3

homeobox protein knotted-1-like 13

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like 11

KNOX family class 2 homeodomain protein

putative knotted-like transcription factor family protein

homeobox protein HD1

homeobox protein knotted-1-like 3

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like 11

homeobox knotted-like protein

homeobox protein knotted-1-like 5

homeobox protein knotted-1-like 3

homeobox protein knotted-1-like LET12

homeobox 2 protein

homeobox protein knotted-1-like 4

homeobox protein knotted-1-like 5

homeobox protein knotted-1-like 4

homeobox protein knotted-1-like 3

homeobox protein knotted-1-like 13

homeobox protein HD1

homeobox protein knotted-1-like 3

homeobox protein HD1

homeobox protein knotted-1-like 3

homeobox protein knotted-1-like 4

homeobox protein HD1

homeobox protein knotted-1-like 3

homeobox protein HD1

homeobox protein knotted-1-like 4

homeobox protein knotted-1-like 5

homeobox protein knotted-1-like 3

homeobox protein knotted-1-like LET12

homeobox protein HD1

homeobox protein knotted-1-like LET12

homeobox protein knotted-1-like 3

homeobox protein knotted-1-like LET12

homeobox protein HD1

homeobox protein knotted-1-like 3

homeobox protein knotted-1-like LET12

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04136	Autophagy - other	3
bdi00740	Riboflavin metabolism	2
bdi01240	Biosynthesis of cofactors	2
bdi04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04075	Plant hormone signal transduction	3
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01240	Biosynthesis of cofactors	2
osa04142	Lysosome	2
osa00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00562	Inositol phosphate metabolism	3
gma00564	Glycerophospholipid metabolism	3
gma00565	Ether lipid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00480	Glutathione metabolism	3
sly00905	Brassinosteroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04136	Autophagy - other	3
bra00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	4
vvi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04016	MAPK signaling pathway - plant	2
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	4
ppo00670	One carbon pool by folate	3
ppo00030	Pentose phosphate pathway	2
ppo00710	Carbon fixation by Calvin cycle	2
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00270	Cysteine and methionine metabolism	2
ppo01230	Biosynthesis of amino acids	2
ppo00940	Phenylpropanoid biosynthesis	2
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00040	Pentose and glucuronate interconversions	2
mtr00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00943	Isoflavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	3
ghi04075	Plant hormone signal transduction	3
ghi00330	Arginine and proline metabolism	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00052	Galactose metabolism	2
ghi00520	Amino sugar and nucleotide sugar metabolism	2
ghi01250	Biosynthesis of nucleotide sugars	2
ghi04016	MAPK signaling pathway - plant	2
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00520	Amino sugar and nucleotide sugar metabolism	3
bna04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00520	Amino sugar and nucleotide sugar metabolism	2
bna04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00052	Galactose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00350	Tyrosine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2
nta04814	Motor proteins	2

Expression

Expression pattern

Entrez Gene ID^*

100846624

100829302

100834996

123114519

123093762

123136529

123408764

123402147

123449873

4345191

4328520

4341661

732756

100383874

100284049

8077964

8077633

110430820

842602

829335

832593

100790048

100810257

100812596

543521

101249149

544030

103855895

103851331

103850287

100254363

100246520

100259923

7458397

7490922

7489133

25488391

11437517

11426748

107962913

107963687

107888400

106371604

106406927

106410520

102592058

102600529

102584843

102614949

102617560

102627657

107780666

107772204

142175535

66054466

The preparation time of this page was 0.2 [sec].


Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100846624 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100846624 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**