ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	103638717	homeobox protein knotted-1-like 11
zma-r.6	103638717	homeobox protein knotted-1-like 11
zma-m.5	103638717	homeobox protein knotted-1-like 11
zma-u.5	732756	KNOX family class 2 homeodomain protein
zma-u.5	100383874	putative knotted-like transcription factor family protein
zma-u.5	100284833	uncharacterized LOC100284833
sbi-r.1	8077964	homeobox protein knotted-1-like 3
sbi-r.1	110430820	homeobox protein knotted-1-like 11
sbi-r.1	8077633	homeobox protein knotted-1-like 2
osa-u.5	4345191	homeobox protein knotted-1-like 13
osa-u.5	4341661	homeobox protein knotted-1-like 11
osa-u.5	4331449	homeobox protein knotted-1-like 3
tae-r.2	123098998	homeobox protein knotted-1-like 3
tae-r.2	123062707	homeobox protein knotted-1-like 11
tae-r.2	123136529	homeobox protein knotted-1-like 2
hvu-r.1	123449873	homeobox protein knotted-1-like 3
hvu-r.1	123408764	homeobox protein knotted-1-like 11
hvu-r.1	123402147	homeobox protein knotted-1-like 2
bdi-r.1	100846624	homeobox protein knotted-1-like 13
bdi-r.1	100829302	homeobox protein knotted-1-like 2
bdi-r.1	100839642	homeobox protein knotted-1-like 3
ath-u.5	KNAT3	homeobox protein knotted-1-like 3
ath-u.5	KNAT5	homeobox protein knotted-1-like 5
ath-u.5	KNAT4	homeobox protein knotted-1-like 4
gma-u.5	100808872	homeobox protein HD1
gma-u.5	100810257	homeobox protein knotted-1-like 3
gma-u.5	100781997	homeobox protein knotted-1-like LET12
sly-u.5	THox2	homeobox 2 protein
sly-u.5	T12	homeobox protein knotted-1-like LET12
sly-u.5	101261052	homeobox protein knotted-1-like 3
bra-r.6	103851331	homeobox protein knotted-1-like 5
bra-r.6	103874387	homeobox protein knotted-1-like 3
bra-r.6	103862107	homeobox protein knotted-1-like 5
vvi-u.5	100259923	homeobox protein HD1
vvi-u.5	100254363	homeobox protein knotted-1-like 3
vvi-u.5	100246520	homeobox protein knotted-1-like 13
ppo-u.5	7490922	homeobox protein HD1
ppo-u.5	7458397	homeobox protein knotted-1-like 3
ppo-u.5	7489133	homeobox protein knotted-1-like 3
mtr-u.5	25481940	homeobox protein knotted-1-like 3
mtr-u.5	11426748	homeobox protein knotted-1-like 3
mtr-u.5	25488391	homeobox protein knotted-1-like 4
ghi-r.1	107906859	homeobox protein knotted-1-like 3
ghi-r.1	107907313	homeobox protein knotted-1-like 3
ghi-r.1	107926979	homeobox protein HD1
bna-r.1	106394496	homeobox protein HD1
bna-r.1	106371604	homeobox protein knotted-1-like 5
bna-r.1	111204267	homeobox protein knotted-1-like 4
sot-r.1	102600529	homeobox protein HD1
sot-r.1	102606182	homeobox protein knotted-1-like 3
sot-r.1	102592058	homeobox protein knotted-1-like LET12
cit-r.1	102627657	homeobox protein HD1
cit-r.1	102617560	homeobox protein knotted-1-like LET12
cit-r.1	102614949	homeobox protein knotted-1-like 3
nta-r.1	107823232	homeobox protein knotted-1-like LET12
nta-r.1	107787501	homeobox protein knotted-1-like 3
nta-r.1	107773625	homeobox protein knotted-1-like LET12
cre-r.1	CHLRE_08g375400v5	uncharacterized protein

Top 50 coexpressed genes to 103638717 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103638717 (zma-u.5 coexpression data)

CoexMap"103638717"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(1994 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(3371 genes)

IEA

GO MF

GO:0003677 [list] [network] DNA binding

(2288 genes)

IEA

Protein

XP_008659775.1 [sequence] [blastp]
XP_008659776.1 [sequence] [blastp]
XP_020399711.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, plas 1, pero 1	(predict for XP_008659775.1)
nucl 8, cyto 1, plas 1, pero 1, cyto_pero 1, cyto_plas 1	(predict for XP_008659776.1)
nucl 8, cyto 1, plas 1, pero 1, cyto_pero 1, cyto_plas 1	(predict for XP_020399711.1)

Subcellular
localization
TargetP

scret 4, other 4	(predict for XP_008659775.1)
scret 4, other 4	(predict for XP_008659776.1)
scret 4, other 4	(predict for XP_020399711.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 103638717	zma-r.6 for 103638717	zma-m.5 for 103638717	zma-u.5 for 732756	zma-u.5 for 100383874	zma-u.5 for 100284833	sbi-r.1 for 8077964	sbi-r.1 for 110430820	sbi-r.1 for 8077633	osa-u.5 for 4345191	osa-u.5 for 4341661	osa-u.5 for 4331449	tae-r.2 for 123098998	tae-r.2 for 123062707	tae-r.2 for 123136529	hvu-r.1 for 123449873	hvu-r.1 for 123408764	hvu-r.1 for 123402147	bdi-r.1 for 100846624	bdi-r.1 for 100829302	bdi-r.1 for 100839642	ath-u.5 for KNAT3	ath-u.5 for KNAT5	ath-u.5 for KNAT4	gma-u.5 for 100808872	gma-u.5 for 100810257	gma-u.5 for 100781997	sly-u.5 for THox2	sly-u.5 for T12	sly-u.5 for 101261052	bra-r.6 for 103851331	bra-r.6 for 103874387	bra-r.6 for 103862107	vvi-u.5 for 100259923	vvi-u.5 for 100254363	vvi-u.5 for 100246520	ppo-u.5 for 7490922	ppo-u.5 for 7458397	ppo-u.5 for 7489133	mtr-u.5 for 25481940	mtr-u.5 for 11426748	mtr-u.5 for 25488391	ghi-r.1 for 107906859	ghi-r.1 for 107907313	ghi-r.1 for 107926979	bna-r.1 for 106394496	bna-r.1 for 106371604	bna-r.1 for 111204267	sot-r.1 for 102600529	sot-r.1 for 102606182	sot-r.1 for 102592058	cit-r.1 for 102627657	cit-r.1 for 102617560	cit-r.1 for 102614949	nta-r.1 for 107823232	nta-r.1 for 107787501	nta-r.1 for 107773625	cre-r.1 for CHLRE_08g375400v5

Ortholog

Ortholog ID: 585

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

KNAT3

KNAT5

KNAT7

LOC100810257

LOC100812596

LOC100790048

THox2

T12

Function^*

KNOX family class 2 homeodomain protein

putative knotted-like transcription factor family protein

homeobox protein HD1