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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   THox2   homeobox 2 protein 
 sly-r.6   THox2   homeobox 2 protein 
 sly-m.5   THox2   homeobox 2 protein 
 sly-u.5   T12   homeobox protein knotted-1-like LET12 
 sly-u.5   101261052   homeobox protein knotted-1-like 3 
 sly-u.5   101249149   homeobox protein knotted-1-like LET12 
 ath-u.5   KNAT5   homeobox protein knotted-1-like 5 
 ath-u.5   KNAT4   homeobox protein knotted-1-like 4 
 ath-u.5   KNAT3   homeobox protein knotted-1-like 3 
 gma-u.5   100782179   homeobox protein knotted-1-like 7-like 
 gma-u.5   100808872   homeobox protein HD1 
 gma-u.5   100803673   homeobox protein knotted-1-like LET12 
 vvi-u.5   100259923   homeobox protein HD1 
 vvi-u.5   100246520   homeobox protein knotted-1-like 13 
 vvi-u.5   100254363   homeobox protein knotted-1-like 3 
 ppo-u.5   7455658   homeobox protein knotted-1-like LET12 
 ppo-u.5   7458397   homeobox protein knotted-1-like 3 
 ppo-u.5   7489133   homeobox protein knotted-1-like 3 
 mtr-u.5   25488391   homeobox protein knotted-1-like 4 
 mtr-u.5   25493970   homeobox protein knotted-1-like 4 
 mtr-u.5   25481940   homeobox protein knotted-1-like 3 
 osa-u.5   4328520   homeobox protein knotted-1-like 2 
 osa-u.5   4331449   homeobox protein knotted-1-like 3 
 osa-u.5   4341661   homeobox protein knotted-1-like 11 
 zma-u.5   103638717   homeobox protein knotted-1-like 11 
 zma-u.5   100383874   putative knotted-like transcription factor family protein 
 zma-u.5   100284833   uncharacterized LOC100284833 

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Top 50 coexpressed genes to THox2 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to THox2 (sly-u.5 coexpression data)

CoexMap"544030"


slyTHox2 | Entrez gene ID : 544030      
Species sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 6 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (493 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (282 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (326 genes)  IEA  
Protein NP_001298112.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001298112.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001298112.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
THox2

.
sly-r.6
for
THox2

.
sly-m.5
for
THox2

.
sly-u.5
for
T12

.
sly-u.5
for
101261052

.
sly-u.5
for
101249149

.
ath-u.5
for
KNAT5

.
ath-u.5
for
KNAT4

.
ath-u.5
for
KNAT3

.
gma-u.5
for
100782179

.
gma-u.5
for
100808872

.
gma-u.5
for
100803673

.
vvi-u.5
for
100259923

.
vvi-u.5
for
100246520

.
vvi-u.5
for
100254363

.
ppo-u.5
for
7455658

.
ppo-u.5
for
7458397

.
ppo-u.5
for
7489133

.
mtr-u.5
for
25488391

.
mtr-u.5
for
25493970

.
mtr-u.5
for
25481940

.
osa-u.5
for
4328520

.
osa-u.5
for
4331449

.
osa-u.5
for
4341661

.
zma-u.5
for
103638717

.
zma-u.5
for
100383874

.
zma-u.5
for
100284833

.


Ortholog ID: 585
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol KNAT3 KNAT7 LOC100810257 LOC100790048 THox2 T12 LOC4328520 LOC4345191 LOC732756 LOC100383874 LOC103855895 LOC103850287 LOC100259923 LOC100254363 LOC7458397 LOC7490922 LOC25488391 LOC11426748 LOC123093762 LOC123136529 LOC123449873 LOC123408764 LOC107888400 LOC107962913 LOC106406927 LOC106371604 CHLRE_08g375400v5 LOC8077633 LOC110430820 LOC102584843 LOC102592058 LOC102627657 LOC102614949 LOC100846624 LOC100829302 LOC107772204 LOC142175535
Function* homeobox protein knotted-1-like 3 homeobox knotted-like protein homeobox protein knotted-1-like 3 homeobox protein knotted-1-like 3 homeobox 2 protein homeobox protein knotted-1-like LET12 homeobox protein knotted-1-like 2 homeobox protein knotted-1-like 13 KNOX family class 2 homeodomain protein putative knotted-like transcription factor family protein homeobox protein knotted-1-like 4 homeobox protein knotted-1-like 4 homeobox protein HD1 homeobox protein knotted-1-like 3 homeobox protein knotted-1-like 3 homeobox protein HD1 homeobox protein knotted-1-like 4 homeobox protein knotted-1-like 3 homeobox protein knotted-1-like 3 homeobox protein knotted-1-like 2 homeobox protein knotted-1-like 3 homeobox protein knotted-1-like 11 homeobox protein knotted-1-like 4 homeobox protein knotted-1-like 3 homeobox protein knotted-1-like 5 homeobox protein knotted-1-like 5 uncharacterized protein homeobox protein knotted-1-like 2 homeobox protein knotted-1-like 11 homeobox protein knotted-1-like LET12 homeobox protein knotted-1-like LET12 homeobox protein HD1 homeobox protein knotted-1-like 3 homeobox protein knotted-1-like 13 homeobox protein knotted-1-like 2 homeobox protein knotted-1-like 3 homeobox protein knotted-1-like LET12
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00562 Inositol phosphate metabolism 3
gma00564 Glycerophospholipid metabolism 3
gma00565 Ether lipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 4
vvi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 4
ppo00670 One carbon pool by folate 3
ppo00030 Pentose phosphate pathway 2
ppo00710 Carbon fixation by Calvin cycle 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00270 Cysteine and methionine metabolism 2
ppo01230 Biosynthesis of amino acids 2
ppo00940 Phenylpropanoid biosynthesis 2
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00943 Isoflavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00052 Galactose metabolism 2
ghi00520 Amino sugar and nucleotide sugar metabolism 2
ghi01250 Biosynthesis of nucleotide sugars 2
ghi04016 MAPK signaling pathway - plant 2
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 3
ghi04075 Plant hormone signal transduction 3
ghi00330 Arginine and proline metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00520 Amino sugar and nucleotide sugar metabolism 2
bna04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00520 Amino sugar and nucleotide sugar metabolism 3
bna04016 MAPK signaling pathway - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00052 Galactose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04136 Autophagy - other 3
bdi00740 Riboflavin metabolism 2
bdi01240 Biosynthesis of cofactors 2
bdi04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta04814 Motor proteins 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832593 842602 100810257 100790048 544030 543521 4328520 4345191 732756 100383874 103855895 103850287 100259923 100254363 7458397 7490922 25488391 11426748 123093762 123136529 123449873 123408764 107888400 107962913 106406927 106371604 66054466 8077633 110430820 102584843 102592058 102627657 102614949 100846624 100829302 107772204 142175535
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