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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   112268962   pentatricopeptide repeat-containing protein At3g18020 
 tae-r.2   123051580   pentatricopeptide repeat-containing protein At3g18020 
 hvu-r.1   123424743   pentatricopeptide repeat-containing protein At3g18020 
 osa-u.5   4344262   pentatricopeptide repeat-containing protein At3g18020 
 zma-u.5   103647935   pentatricopeptide repeat-containing protein At3g18020 
 sbi-r.1   8078542   pentatricopeptide repeat-containing protein At3g18020 
 ath-u.5   AT3G18020   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   106796792   pentatricopeptide repeat-containing protein At3g18020 
 sly-u.5   101244857   pentatricopeptide repeat-containing protein 
 vvi-u.5   100258348   pentatricopeptide repeat-containing protein At3g18020 
 ppo-u.5   7462491   pentatricopeptide repeat-containing protein At3g18020 
 mtr-u.5   11416962   pentatricopeptide repeat-containing protein At3g18020 
 bna-r.1   106392069   pentatricopeptide repeat-containing protein At3g18020 
 bna-r.1   106422512   pentatricopeptide repeat-containing protein At3g18020-like 
 sot-r.1   102598679   pentatricopeptide repeat-containing protein At3g18020 
 cit-r.1   102627267   pentatricopeptide repeat-containing protein At3g18020 
 nta-r.1   107805054   uncharacterized LOC107805054 
 nta-r.1   107771852   uncharacterized LOC107771852 

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Top 50 coexpressed genes to 112268962 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 112268962 (bdi-r.1 coexpression data)

CoexMap""


bdiLOC112268962 | Entrez gene ID : 112268962    
Species bdi tae hvu osa zma sbi ath gma sly vvi ppo mtr bna sot cit nta ghi cre bra
Paralog 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
Function pentatricopeptide repeat-containing protein At3g18020
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (4040 genes)  IEA  
Protein XP_024311136.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto_nucl 4,  cyto 2,  plas 1,  chlo 1,  pero 1,  golg_plas 1,  E.R._vacu 1,  cysk_plas 1,  mito_plas 1  (predict for XP_024311136.1)
Subcellular
localization
TargetP
other 4,  chlo 3  (predict for XP_024311136.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
112268962
tae-r.2
for
123051580
hvu-r.1
for
123424743
osa-u.5
for
4344262
zma-u.5
for
103647935
sbi-r.1
for
8078542
ath-u.5
for
AT3G18020
gma-u.5
for
106796792
sly-u.5
for
101244857
vvi-u.5
for
100258348
ppo-u.5
for
7462491
mtr-u.5
for
11416962
bna-r.1
for
106392069
bna-r.1
for
106422512
sot-r.1
for
102598679
cit-r.1
for
102627267
nta-r.1
for
107805054
nta-r.1
for
107771852

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Ortholog ID: 12196
Species bdi tae hvu osa zma sbi ath gma sly vvi ppo mtr bna bna sot cit nta nta
Symbol LOC112268962 LOC123051580 LOC123424743 LOC4344262 LOC103647935 LOC8078542 AT3G18020 LOC106796792 LOC101244857 LOC100258348 LOC7462491 LOC11416962 LOC106392069 LOC106422512 LOC102598679 LOC102627267 LOC107805054 LOC107771852
Function* pentatricopeptide repeat-containing protein At3g18020 pentatricopeptide repeat-containing protein At3g18020 pentatricopeptide repeat-containing protein At3g18020 pentatricopeptide repeat-containing protein At3g18020 pentatricopeptide repeat-containing protein At3g18020 pentatricopeptide repeat-containing protein At3g18020 Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At3g18020 pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At3g18020 pentatricopeptide repeat-containing protein At3g18020 pentatricopeptide repeat-containing protein At3g18020 pentatricopeptide repeat-containing protein At3g18020 pentatricopeptide repeat-containing protein At3g18020-like pentatricopeptide repeat-containing protein At3g18020 pentatricopeptide repeat-containing protein At3g18020 uncharacterized LOC107805054 uncharacterized LOC107771852
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03030 DNA replication 2
hvu03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 112268962 123051580 123424743 4344262 103647935 8078542 821326 106796792 101244857 100258348 7462491 11416962 106392069 106422512 102598679 102627267 107805054 107771852
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