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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   102618631   DNA ligase 6 
 ath-u.5   LIG6   DNA LIGASE 6 
 bra-r.6   103831125   DNA ligase 6 
 ghi-r.1   107911046   DNA ligase 6-like 
 ghi-r.1   107912765   DNA ligase 6 
 bna-r.1   106403696   DNA ligase 6 
 gma-u.5   100807673   DNA ligase 6 
 vvi-u.5   100266816   DNA ligase 6 
 ppo-u.5   7477456   DNA ligase 6 
 mtr-u.5   11442607   DNA ligase 6 
 sly-u.5   101249429   DNA ligase 6 
 sot-r.1   102603887   DNA ligase 1 
 nta-r.1   107805422   DNA ligase 6 
 osa-u.5   4324149   DNA ligase 6 
 zma-u.5   103651343   DNA ligase 6 
 tae-r.2   123078954   DNA ligase 6 
 tae-r.2   123061853   DNA ligase 6 
 hvu-r.1   123444132   DNA ligase 6 
 sbi-r.1   8068030   DNA ligase 6 
 bdi-r.1   100835014   DNA ligase 6 

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Top 50 coexpressed genes to 102618631 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102618631 (cit-r.1 coexpression data)

CoexMap""


citLOC102618631 | Entrez gene ID : 102618631    
Species cit ath bra ghi bna gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
Function DNA ligase 6
KEGG
GO BP
GO:0031848 [list] [network] protection from non-homologous end joining at telomere  (5 genes)  IEA  
GO:0006273 [list] [network] lagging strand elongation  (6 genes)  IEA  
GO:0006303 [list] [network] double-strand break repair via nonhomologous end joining  (12 genes)  IEA  
GO:0036297 [list] [network] interstrand cross-link repair  (13 genes)  IEA  
GO:0071897 [list] [network] DNA biosynthetic process  (18 genes)  IEA  
GO:0006310 [list] [network] DNA recombination  (132 genes)  IEA  
GO CC
GO MF
GO:0003910 [list] [network] DNA ligase (ATP) activity  (5 genes)  IEA  
GO:0035312 [list] [network] 5'-3' DNA exonuclease activity  (9 genes)  IEA  
GO:0003684 [list] [network] damaged DNA binding  (33 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1864 genes)  IEA  
Protein XP_006482181.1 [sequence] [blastp]
XP_006482182.1 [sequence] [blastp]
XP_024956085.1 [sequence] [blastp]
XP_024956086.1 [sequence] [blastp]
XP_024956087.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  chlo 1,  cyto 1  (predict for XP_006482181.1)
nucl 9,  cyto 1,  cysk 1  (predict for XP_006482182.1)
nucl 8,  chlo 1,  cyto 1,  cysk 1  (predict for XP_024956085.1)
nucl 8,  chlo 1  (predict for XP_024956086.1)
nucl 9,  chlo 1,  cysk 1  (predict for XP_024956087.1)
Subcellular
localization
TargetP
other 6,  chlo 4  (predict for XP_006482181.1)
other 6,  chlo 4  (predict for XP_006482182.1)
other 6,  chlo 4  (predict for XP_024956085.1)
other 6,  chlo 4  (predict for XP_024956086.1)
other 6,  chlo 4  (predict for XP_024956087.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
102618631
ath-u.5
for
LIG6
bra-r.6
for
103831125
ghi-r.1
for
107911046
ghi-r.1
for
107912765
bna-r.1
for
106403696
gma-u.5
for
100807673
vvi-u.5
for
100266816
ppo-u.5
for
7477456
mtr-u.5
for
11442607
sly-u.5
for
101249429
sot-r.1
for
102603887
nta-r.1
for
107805422
osa-u.5
for
4324149
zma-u.5
for
103651343
tae-r.2
for
123078954
tae-r.2
for
123061853
hvu-r.1
for
123444132
sbi-r.1
for
8068030
bdi-r.1
for
100835014

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Ortholog ID: 12259
Species cit ath bra ghi ghi bna gma vvi ppo mtr sly sot nta osa zma tae tae hvu sbi bdi
Symbol LOC102618631 LIG6 LOC103831125 LOC107911046 LOC107912765 LOC106403696 LOC100807673 LOC100266816 LOC7477456 LOC11442607 LOC101249429 LOC102603887 LOC107805422 LOC4324149 LOC103651343 LOC123078954 LOC123061853 LOC123444132 LOC8068030 LOC100835014
Function* DNA ligase 6 DNA LIGASE 6 DNA ligase 6 DNA ligase 6-like DNA ligase 6 DNA ligase 6 DNA ligase 6 DNA ligase 6 DNA ligase 6 DNA ligase 6 DNA ligase 6 DNA ligase 1 DNA ligase 6 DNA ligase 6 DNA ligase 6 DNA ligase 6 DNA ligase 6 DNA ligase 6 DNA ligase 6 DNA ligase 6
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 4
bra03040 Spliceosome 3
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 11
bna00052 Galactose metabolism 2
bna00511 Other glycan degradation 2
bna00531 Glycosaminoglycan degradation 2
bna00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03460 Fanconi anemia pathway 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 6
tae03040 Spliceosome 5
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 5
tae03082 ATP-dependent chromatin remodeling 3
tae03430 Mismatch repair 3
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102618631 842991 103831125 107911046 107912765 106403696 100807673 100266816 7477456 11442607 101249429 102603887 107805422 4324149 103651343 123078954 123061853 123444132 8068030 100835014
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