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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7477456   DNA ligase 6 
 ppo-r.4   7477456   DNA ligase 6 
 ppo-m.4   7477456   DNA ligase 6 
 gma-u.5   100807673   DNA ligase 6 
 mtr-u.5   11442607   DNA ligase 6 
 ath-u.5   LIG6   DNA LIGASE 6 
 vvi-u.5   100266816   DNA ligase 6 
 sly-u.5   101249429   DNA ligase 6 
 osa-u.5   4324149   DNA ligase 6 
 zma-u.5   103651343   DNA ligase 6 

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Top 50 coexpressed genes to 7477456 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7477456 (ppo-u.5 coexpression data)

CoexMap"7477456"


ppoLOC7477456 | Entrez gene ID : 7477456    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006273 [list] [network] lagging strand elongation  (5 genes)  IEA  
GO:0071897 [list] [network] DNA biosynthetic process  (20 genes)  IEA  
GO:0006310 [list] [network] DNA recombination  (138 genes)  IEA  
GO:0006281 [list] [network] DNA repair  (290 genes)  IEA  
GO CC
GO MF
GO:0003910 [list] [network] DNA ligase (ATP) activity  (3 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2205 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2559 genes)  IEA  
Protein XP_024455271.2 [sequence] [blastp]
XP_024455272.2 [sequence] [blastp]
XP_024455273.2 [sequence] [blastp]
XP_024455274.2 [sequence] [blastp]
XP_024455275.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_024455271.2)
chlo 10  (predict for XP_024455272.2)
chlo 10  (predict for XP_024455273.2)
chlo 10  (predict for XP_024455274.2)
chlo 10  (predict for XP_024455275.2)
Subcellular
localization
TargetP
chlo 8,  other 3  (predict for XP_024455271.2)
chlo 8,  other 3  (predict for XP_024455272.2)
chlo 8,  other 3  (predict for XP_024455273.2)
chlo 8,  other 3  (predict for XP_024455274.2)
chlo 8,  other 3  (predict for XP_024455275.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7477456

.
ppo-r.4
for
7477456

.
ppo-m.4
for
7477456

.
gma-u.5
for
100807673

.
mtr-u.5
for
11442607

.
ath-u.5
for
LIG6

.
vvi-u.5
for
100266816

.
sly-u.5
for
101249429

.
osa-u.5
for
4324149

.
zma-u.5
for
103651343

.


Ortholog ID: 12259
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna sbi sot cit bdi nta
Symbol LIG6 LOC100807673 LOC101249429 LOC4324149 LOC103651343 LOC103831125 LOC100266816 LOC7477456 LOC11442607 LOC123078954 LOC123061853 LOC123444132 LOC107912765 LOC107911046 LOC106403696 LOC8068030 LOC102603887 LOC102618631 LOC100835014 LOC107805422
Function* DNA LIGASE 6 DNA ligase 6 DNA ligase 6 DNA ligase 6 DNA ligase 6 DNA ligase 6 DNA ligase 6 DNA ligase 6 DNA ligase 6 DNA ligase 6 DNA ligase 6 DNA ligase 6 DNA ligase 6 DNA ligase 6-like DNA ligase 6 DNA ligase 6 DNA ligase 1 DNA ligase 6 DNA ligase 6 DNA ligase 6
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03460 Fanconi anemia pathway 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 4
bra03040 Spliceosome 3
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 6
tae03040 Spliceosome 5
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 5
tae03082 ATP-dependent chromatin remodeling 3
tae03430 Mismatch repair 3
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 11
bna00052 Galactose metabolism 2
bna00511 Other glycan degradation 2
bna00531 Glycosaminoglycan degradation 2
bna00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842991 100807673 101249429 4324149 103651343 103831125 100266816 7477456 11442607 123078954 123061853 123444132 107912765 107911046 106403696 8068030 102603887 102618631 100835014 107805422
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