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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_01g012350v5   uncharacterized protein 
 ath-u.5   AT5G64420   DNA polymerase V family 
 gma-u.5   100803141   rDNA transcriptional regulator pol5 
 gma-u.5   100787296   rDNA transcriptional regulator pol5 
 sly-u.5   101264560   rDNA transcriptional regulator pol5-like 
 sly-u.5   101264257   rDNA transcriptional regulator pol5-like 
 osa-u.5   4328227   rDNA transcriptional regulator pol5 
 zma-u.5   103626594   uncharacterized LOC103626594 
 zma-u.5   103650372   DNA polymerase V family 
 bra-r.6   103873865   rDNA transcriptional regulator pol5 
 vvi-u.5   100268096   rDNA transcriptional regulator pol5 
 ppo-u.5   7478692   rDNA transcriptional regulator pol5-like 
 ppo-u.5   7478774   rDNA transcriptional regulator pol5 
 mtr-u.5   11419794   rDNA transcriptional regulator pol5 
 tae-r.2   123132116   myb-binding protein 1A-like protein 
 tae-r.2   123136136   rDNA transcriptional regulator pol5 
 tae-r.2   123143652   rDNA transcriptional regulator pol5 
 hvu-r.1   123401478   rDNA transcriptional regulator pol5 
 ghi-r.1   121212244   myb-binding protein 1A-like protein 
 ghi-r.1   107894180   myb-binding protein 1A-like protein 
 bna-r.1   125583561   rDNA transcriptional regulator pol5-like 
 bna-r.1   106348052   myb-binding protein 1A 
 sbi-r.1   8069941   myb-binding protein 1A-like protein 
 sot-r.1   102581880   DNA polymerase V 
 cit-r.1   102615838   uncharacterized LOC102615838 
 bdi-r.1   100832357   uncharacterized LOC100832357 
 nta-r.1   107810425   uncharacterized LOC107810425 
 nta-r.1   107801546   uncharacterized LOC107801546 
 nta-r.1   107817930   rDNA transcriptional regulator pol5-like 

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Top 50 coexpressed genes to CHLRE_01g012350v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_01g012350v5 (cre-r.1 coexpression data)

CoexMap"5715053"


creCHLRE_01g012350v5 | Entrez gene ID : 5715053    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 2 1 2 1 1 2 1 3 1 2 2 1 1 1 1 3
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (405 genes)  IEA  
GO CC
GO:0005730 [list] [network] nucleolus  (152 genes)  IEA  
GO MF
GO:0008134 [list] [network] transcription factor binding  (14 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (670 genes)  IEA  
Protein XP_042928245.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 7,  cyto 1,  nucl 1,  E.R. 1,  cyto_pero 1  (predict for XP_042928245.1)
Subcellular
localization
TargetP
other 9  (predict for XP_042928245.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_01g012350v5
ath-u.5
for
AT5G64420
gma-u.5
for
100803141
gma-u.5
for
100787296
sly-u.5
for
101264560
sly-u.5
for
101264257
osa-u.5
for
4328227
zma-u.5
for
103626594
zma-u.5
for
103650372
bra-r.6
for
103873865
vvi-u.5
for
100268096
ppo-u.5
for
7478692
ppo-u.5
for
7478774
mtr-u.5
for
11419794
tae-r.2
for
123132116
tae-r.2
for
123136136
tae-r.2
for
123143652
hvu-r.1
for
123401478
ghi-r.1
for
121212244
ghi-r.1
for
107894180
bna-r.1
for
125583561
bna-r.1
for
106348052
sbi-r.1
for
8069941
sot-r.1
for
102581880
cit-r.1
for
102615838
bdi-r.1
for
100832357
nta-r.1
for
107810425
nta-r.1
for
107801546
nta-r.1
for
107817930


Ortholog ID: 7776
Species cre ath gma gma sly sly osa zma zma bra vvi ppo ppo mtr tae tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta nta
Symbol CHLRE_01g012350v5 AT5G64420 LOC100803141 LOC100787296 LOC101264560 LOC101264257 LOC4328227 LOC103626594 LOC103650372 LOC103873865 LOC100268096 LOC7478692 LOC7478774 LOC11419794 LOC123132116 LOC123136136 LOC123143652 LOC123401478 LOC121212244 LOC107894180 LOC125583561 LOC106348052 LOC8069941 LOC102581880 LOC102615838 LOC100832357 LOC107810425 LOC107801546 LOC107817930
Function* uncharacterized protein DNA polymerase V family rDNA transcriptional regulator pol5 rDNA transcriptional regulator pol5 rDNA transcriptional regulator pol5-like rDNA transcriptional regulator pol5-like rDNA transcriptional regulator pol5 uncharacterized LOC103626594 DNA polymerase V family rDNA transcriptional regulator pol5 rDNA transcriptional regulator pol5 rDNA transcriptional regulator pol5-like rDNA transcriptional regulator pol5 rDNA transcriptional regulator pol5 myb-binding protein 1A-like protein rDNA transcriptional regulator pol5 rDNA transcriptional regulator pol5 rDNA transcriptional regulator pol5 myb-binding protein 1A-like protein myb-binding protein 1A-like protein rDNA transcriptional regulator pol5-like myb-binding protein 1A myb-binding protein 1A-like protein DNA polymerase V uncharacterized LOC102615838 uncharacterized LOC100832357 uncharacterized LOC107810425 uncharacterized LOC107801546 rDNA transcriptional regulator pol5-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 6
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 6
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 4
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 5
sly00970 Aminoacyl-tRNA biosynthesis 2
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 5
zma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03018 RNA degradation 2
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 4
sot03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5715053 836563 100803141 100787296 101264560 101264257 4328227 103626594 103650372 103873865 100268096 7478692 7478774 11419794 123132116 123136136 123143652 123401478 121212244 107894180 125583561 106348052 8069941 102581880 102615838 100832357 107810425 107801546 107817930
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