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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_01g039300v5   uncharacterized protein 
 ath-u.5   PAB4   poly(A) binding protein 4 
 gma-u.5   100780329   polyadenylate-binding protein 2 
 gma-u.5   100778879   polyadenylate-binding protein 8 
 gma-u.5   100813735   polyadenylate-binding protein 2 
 sly-u.5   101258105   polyadenylate-binding protein 8-like 
 sly-u.5   101261596   polyadenylate-binding protein 2-like 
 sly-u.5   101264108   polyadenylate-binding protein 3 
 osa-u.5   4345242   polyadenylate-binding protein 2 
 osa-u.5   4336331   polyadenylate-binding protein 2 
 osa-u.5   4341408   polyadenylate-binding protein 5 
 zma-u.5   100383542   uncharacterized LOC100383542 
 zma-u.5   103641822   polyadenylate-binding protein 2 
 zma-u.5   100502035   uncharacterized LOC100502035 
 bra-r.6   103864463   polyadenylate-binding protein 4 
 bra-r.6   103871402   polyadenylate-binding protein 8 
 bra-r.6   103830833   polyadenylate-binding protein 5 
 vvi-u.5   100255846   polyadenylate-binding protein 2-like 
 vvi-u.5   100262903   polyadenylate-binding protein 2 
 vvi-u.5   100263065   polyadenylate-binding protein 3 
 ppo-u.5   7492048   polyadenylate-binding protein 8 
 ppo-u.5   7462869   polyadenylate-binding protein 2 
 mtr-u.5   11445084   polyadenylate-binding protein 8 
 mtr-u.5   11429679   polyadenylate-binding protein 2 
 mtr-u.5   11419187   polyadenylate-binding protein 2 
 tae-r.2   123053837   polyadenylate-binding protein 2 
 hvu-r.1   123398305   polyadenylate-binding protein 8-like 
 hvu-r.1   123427184   polyadenylate-binding protein 2-like 
 hvu-r.1   123411286   polyadenylate-binding protein 2-like 
 ghi-r.1   107922144   polyadenylate-binding protein 2 
 ghi-r.1   107894289   polyadenylate-binding protein 8 
 ghi-r.1   107903180   polyadenylate-binding protein 2 
 bna-r.1   111204605   polyadenylate-binding protein 2-like 
 bna-r.1   125596826   polyadenylate-binding protein 2-like 
 bna-r.1   106361076   polyadenylate-binding protein 2-like 
 sbi-r.1   8075901   polyadenylate-binding protein 2 
 sbi-r.1   110432373   polyadenylate-binding protein 2-like 
 sot-r.1   102585145   polyadenylate-binding protein 8-like 
 sot-r.1   102580924   polyadenylate-binding protein 2-like 
 cit-r.1   PABP2   poly A-binding protein 2 
 cit-r.1   102615487   polyadenylate-binding protein 3 
 cit-r.1   102616823   polyadenylate-binding protein 2-like 
 bdi-r.1   100827201   polyadenylate-binding protein 2 
 bdi-r.1   100828713   polyadenylate-binding protein 2 
 bdi-r.1   100829057   polyadenylate-binding protein 2 
 nta-r.1   107813138   polyadenylate-binding protein 2 
 nta-r.1   107761991   polyadenylate-binding protein 2-like 
 nta-r.1   107784553   polyadenylate-binding protein 8-like 

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Top 50 coexpressed genes to CHLRE_01g039300v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_01g039300v5 (cre-r.1 coexpression data)

CoexMap"5715532"


creCHLRE_01g039300v5 | Entrez gene ID : 5715532      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 3 3 3 3 3 3 2 3 1 3 3 3 2 2 3 3 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03015 [list] [network] mRNA surveillance pathway (40 genes)
cre03018 [list] [network] RNA degradation (48 genes)
GO BP
GO CC
GO:1990904 [list] [network] ribonucleoprotein complex  (370 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_042928681.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 3,  nucl 2,  nucl_plas 2,  chlo 1,  mito 1,  chlo_mito 1,  cyto_E.R. 1  (predict for XP_042928681.1)
Subcellular
localization
TargetP
chlo 7,  other 5  (predict for XP_042928681.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_01g039300v5
ath-u.5
for
PAB4
gma-u.5
for
100780329
gma-u.5
for
100778879
gma-u.5
for
100813735
sly-u.5
for
101258105
sly-u.5
for
101261596
sly-u.5
for
101264108
osa-u.5
for
4345242
osa-u.5
for
4336331
osa-u.5
for
4341408
zma-u.5
for
100383542
zma-u.5
for
103641822
zma-u.5
for
100502035
bra-r.6
for
103864463
bra-r.6
for
103871402
bra-r.6
for
103830833
vvi-u.5
for
100255846
vvi-u.5
for
100262903
vvi-u.5
for
100263065
ppo-u.5
for
7492048
ppo-u.5
for
7462869
mtr-u.5
for
11445084
mtr-u.5
for
11429679
mtr-u.5
for
11419187
tae-r.2
for
123053837
hvu-r.1
for
123398305
hvu-r.1
for
123427184
hvu-r.1
for
123411286
ghi-r.1
for
107922144
ghi-r.1
for
107894289
ghi-r.1
for
107903180
bna-r.1
for
111204605
bna-r.1
for
125596826
bna-r.1
for
106361076
sbi-r.1
for
8075901
sbi-r.1
for
110432373
sot-r.1
for
102585145
sot-r.1
for
102580924
cit-r.1
for
PABP2
cit-r.1
for
102615487
cit-r.1
for
102616823
bdi-r.1
for
100827201
bdi-r.1
for
100828713
bdi-r.1
for
100829057
nta-r.1
for
107813138
nta-r.1
for
107761991
nta-r.1
for
107784553


Ortholog ID: 542
Species cre ath gma gma gma sly sly sly osa osa osa zma zma zma bra bra vvi vvi vvi ppo ppo mtr tae tae tae hvu hvu hvu ghi ghi ghi bna bna bna sbi sbi sot sot cit cit cit bdi bdi bdi nta nta nta
Symbol CHLRE_01g039300v5 PAB2 LOC100780329 LOC100798998 LOC100784442 LOC101258105 LOC101261596 LOC101264108 LOC4345242 LOC4341408 LOC4346409 LOC100383542 LOC100502035 LOC100381531 LOC103830833 LOC103844362 LOC100255846 LOC100263065 LOC100241923 LOC7467793 LOC18104862 LOC11429679 LOC123053837 LOC123154688 LOC123157268 LOC123398305 LOC123427184 LOC123411286 LOC107894289 LOC107908893 LOC107935017 LOC106381077 LOC106432291 LOC106391056 LOC8075901 LOC110432373 LOC102585145 LOC102580924 PABP2 LOC102615487 LOC102628035 LOC100827201 LOC100828713 LOC100829057 LOC107813138 LOC107809091 LOC107814429
Function* uncharacterized protein poly(A) binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 3 polyadenylate-binding protein 2 polyadenylate-binding protein 8-like polyadenylate-binding protein 2-like polyadenylate-binding protein 3 polyadenylate-binding protein 2 polyadenylate-binding protein 5 polyadenylate-binding protein 2 uncharacterized LOC100383542 uncharacterized LOC100502035 Polyadenylate-binding protein 2 polyadenylate-binding protein 5 polyadenylate-binding protein 2 polyadenylate-binding protein 2-like polyadenylate-binding protein 3 polyadenylate-binding protein 2-like polyadenylate-binding protein 3 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 8-like polyadenylate-binding protein 2-like polyadenylate-binding protein 2-like polyadenylate-binding protein 8 polyadenylate-binding protein 8 polyadenylate-binding protein 8 polyadenylate-binding protein 5-like polyadenylate-binding protein 5-like polyadenylate-binding protein 4 polyadenylate-binding protein 2 polyadenylate-binding protein 2-like polyadenylate-binding protein 8-like polyadenylate-binding protein 2-like poly A-binding protein 2 polyadenylate-binding protein 3 polyadenylate-binding protein 2-like polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 3-like polyadenylate-binding protein 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 11
cre01230 Biosynthesis of amino acids 6
cre01210 2-Oxocarboxylic acid metabolism 3
cre03013 Nucleocytoplasmic transport 2
cre00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 5
ath00620 Pyruvate metabolism 4
ath00190 Oxidative phosphorylation 4
ath00020 Citrate cycle (TCA cycle) 3
ath03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 10
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 5
osa04141 Protein processing in endoplasmic reticulum 3
osa03018 RNA degradation 3
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 3
osa03018 RNA degradation 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 13
osa03015 mRNA surveillance pathway 4
osa03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
zma03018 RNA degradation 2
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 5
zma00970 Aminoacyl-tRNA biosynthesis 3
zma03015 mRNA surveillance pathway 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 5
zma03015 mRNA surveillance pathway 4
zma03010 Ribosome 3
zma00970 Aminoacyl-tRNA biosynthesis 2
zma00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 7
vvi00970 Aminoacyl-tRNA biosynthesis 3
vvi03015 mRNA surveillance pathway 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 4
vvi00190 Oxidative phosphorylation 2
vvi04142 Lysosome 2
vvi04145 Phagosome 2
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 6
vvi03015 mRNA surveillance pathway 2
vvi03018 RNA degradation 2
vvi03010 Ribosome 2
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo03015 mRNA surveillance pathway 4
ppo03018 RNA degradation 4
ppo01210 2-Oxocarboxylic acid metabolism 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 6
tae03015 mRNA surveillance pathway 4
tae01230 Biosynthesis of amino acids 4
tae03018 RNA degradation 3
tae00330 Arginine and proline metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 6
tae03018 RNA degradation 3
tae04814 Motor proteins 3
tae03013 Nucleocytoplasmic transport 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 10
tae03018 RNA degradation 3
tae04814 Motor proteins 3
tae03013 Nucleocytoplasmic transport 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 11
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 4
hvu00020 Citrate cycle (TCA cycle) 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
ghi03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
ghi03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
ghi03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00250 Alanine, aspartate and glutamate metabolism 7
bna00230 Purine metabolism 5
bna01232 Nucleotide metabolism 5
bna01240 Biosynthesis of cofactors 5
bna03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 4
sbi03010 Ribosome 2
sbi03015 mRNA surveillance pathway 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 7
sbi00970 Aminoacyl-tRNA biosynthesis 3
sbi03015 mRNA surveillance pathway 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 3
sot01240 Biosynthesis of cofactors 3
sot00190 Oxidative phosphorylation 3
sot04145 Phagosome 3
sot01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 5
sot01230 Biosynthesis of amino acids 2
sot03015 mRNA surveillance pathway 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 4
cit03015 mRNA surveillance pathway 2
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 14
bdi03015 mRNA surveillance pathway 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 6
bdi03015 mRNA surveillance pathway 4
bdi03018 RNA degradation 3
bdi04120 Ubiquitin mediated proteolysis 2
bdi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 3
bdi03010 Ribosome 3
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 7
nta01230 Biosynthesis of amino acids 2
nta03015 mRNA surveillance pathway 2
nta03018 RNA degradation 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 12
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5715532 829557 100780329 100798998 100784442 101258105 101261596 101264108 4345242 4341408 4346409 100383542 100502035 100381531 103830833 103844362 100255846 100263065 100241923 7467793 18104862 11429679 123053837 123154688 123157268 123398305 123427184 123411286 107894289 107908893 107935017 106381077 106432291 106391056 8075901 110432373 102585145 102580924 102577977 102615487 102628035 100827201 100828713 100829057 107813138 107809091 107814429
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