ATTED-II : GeneCoexpression result

Species	Gene	Description
cre-r.1	CHLRE_01g039900v5	uncharacterized protein
ath-u.5	TRZ4	tRNAse Z4
ath-u.5	TRZ3	tRNAse Z3
gma-u.5	100786011	tRNase Z TRZ3, mitochondrial
gma-u.5	100784996	tRNase Z TRZ3, mitochondrial
sly-u.5	101245927	tRNAse Z TRZ4, mitochondrial-like
sly-u.5	101243871	tRNase Z TRZ3, mitochondrial
osa-u.5	4324278	tRNase Z TRZ3, mitochondrial
zma-u.5	103635013	tRNase Z TRZ3, mitochondrial
bra-r.6	103869840	tRNAse Z TRZ4, mitochondrial
bra-r.6	103871232	tRNase Z TRZ3, mitochondrial
vvi-u.5	100254820	tRNase Z TRZ3, mitochondrial
ppo-u.5	7475087	tRNase Z TRZ3, mitochondrial
mtr-u.5	11427220	tRNase Z TRZ3, mitochondrial
tae-r.2	123060809	tRNase Z TRZ3, mitochondrial
tae-r.2	123069373	tRNase Z TRZ3, mitochondrial
tae-r.2	123077884	tRNase Z TRZ3, mitochondrial
hvu-r.1	123443267	tRNase Z TRZ3, mitochondrial-like
ghi-r.1	107913895	tRNase Z TRZ3, mitochondrial
ghi-r.1	107897490	tRNase Z TRZ3, mitochondrial
bna-r.1	106401888	tRNAse Z TRZ4, mitochondrial-like
bna-r.1	106406620	tRNase Z TRZ3, mitochondrial-like
bna-r.1	106452219	tRNAse Z TRZ4, mitochondrial
sbi-r.1	8078098	tRNase Z TRZ3, mitochondrial
sot-r.1	102596953	zinc phosphodiesterase ELAC protein 2-like
sot-r.1	102594613	zinc phosphodiesterase ELAC protein 2
cit-r.1	102625658	tRNase Z TRZ3, mitochondrial
bdi-r.1	100834590	tRNase Z TRZ3, mitochondrial
nta-r.1	107821661	tRNAse Z TRZ4, mitochondrial
nta-r.1	107828349	tRNAse Z TRZ4, mitochondrial
nta-r.1	107832311	tRNAse Z TRZ4, mitochondrial

Annotation

functional annotation

KEGG

GO BP

GO:1990180 [list] [network] mitochondrial tRNA 3'-end processing

(2 genes)

IEA

GO CC

GO:0005739 [list] [network] mitochondrion

(441 genes)

IEA

GO MF

GO:0042781 [list] [network] 3'-tRNA processing endoribonuclease activity

(4 genes)

IEA

Protein

XP_042928691.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, nucl 1, mito 1, plas 1, pero 1, cysk 1, chlo_mito 1, cyto_mito 1, cysk_plas 1

(predict for XP_042928691.1)

Subcellular
localization
TargetP

other 9

(predict for XP_042928691.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_01g039900v5	ath-u.5 for TRZ4	ath-u.5 for TRZ3	gma-u.5 for 100786011	gma-u.5 for 100784996	sly-u.5 for 101245927	sly-u.5 for 101243871	osa-u.5 for 4324278	zma-u.5 for 103635013	bra-r.6 for 103869840	bra-r.6 for 103871232	vvi-u.5 for 100254820	ppo-u.5 for 7475087	mtr-u.5 for 11427220	tae-r.2 for 123060809	tae-r.2 for 123069373	tae-r.2 for 123077884	hvu-r.1 for 123443267	ghi-r.1 for 107913895	ghi-r.1 for 107897490	bna-r.1 for 106401888	bna-r.1 for 106406620	bna-r.1 for 106452219	sbi-r.1 for 8078098	sot-r.1 for 102596953	sot-r.1 for 102594613	cit-r.1 for 102625658	bdi-r.1 for 100834590	nta-r.1 for 107821661	nta-r.1 for 107828349	nta-r.1 for 107832311

Ortholog

Ortholog ID: 5108

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

CHLRE_01g039900v5

TRZ4

TRZ3

Function^*

uncharacterized protein

tRNAse Z4

tRNAse Z3

tRNase Z TRZ3, mitochondrial

tRNAse Z TRZ4, mitochondrial-like

tRNase Z TRZ3, mitochondrial

tRNAse Z TRZ4, mitochondrial

tRNase Z TRZ3, mitochondrial

tRNase Z TRZ3, mitochondrial-like

tRNase Z TRZ3, mitochondrial

tRNAse Z TRZ4, mitochondrial-like

tRNase Z TRZ3, mitochondrial-like

tRNase Z TRZ3, mitochondrial

zinc phosphodiesterase ELAC protein 2-like

zinc phosphodiesterase ELAC protein 2

tRNase Z TRZ3, mitochondrial

tRNAse Z TRZ4, mitochondrial

zinc phosphodiesterase ELAC protein 2-like

tRNase Z TRZ3, mitochondrial

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00970	Aminoacyl-tRNA biosynthesis	3
cre03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00970	Aminoacyl-tRNA biosynthesis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	5
ath03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	3
osa03420	Nucleotide excision repair	2
osa03013	Nucleocytoplasmic transport	2
osa04141	Protein processing in endoplasmic reticulum	2
osa04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	3
zma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04146	Peroxisome	2
bra03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	5
bra03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	4
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	4
tae03040	Spliceosome	3
tae03272	Virion - Hepatitis viruses	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3
tae03272	Virion - Hepatitis viruses	3
tae03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	4
tae03272	Virion - Hepatitis viruses	3
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	2
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	2
bdi03015	mRNA surveillance pathway	2
bdi04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	2
nta00190	Oxidative phosphorylation	2
nta00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2
nta03015	mRNA surveillance pathway	2

Expression

Expression pattern

Entrez Gene ID^*

5715544

820872

841647

100786011

100784996

101245927

101243871

4324278

103635013

103869840

103871232

100254820

7475087

11427220

123060809

123069373

123077884

123443267

107913895

107897490

106401888

106406620

106345746

8078098

102596953

102594613

102625658

100834590

107821661

107789833

107785747

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_01g039900v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_01g039900v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	2	2	2	1	1	2	1	1	1	3	1	2	3	1	2	1	1	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_01g039900v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_01g039900v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**