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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   102625658   tRNase Z TRZ3, mitochondrial 
 ath-u.5   TRZ4   tRNAse Z4 
 ath-u.5   TRZ3   tRNAse Z3 
 bra-r.6   103869840   tRNAse Z TRZ4, mitochondrial 
 bra-r.6   103871232   tRNase Z TRZ3, mitochondrial 
 ghi-r.1   107913895   tRNase Z TRZ3, mitochondrial 
 ghi-r.1   107897490   tRNase Z TRZ3, mitochondrial 
 bna-r.1   106401888   tRNAse Z TRZ4, mitochondrial-like 
 bna-r.1   106406620   tRNase Z TRZ3, mitochondrial-like 
 bna-r.1   106452219   tRNAse Z TRZ4, mitochondrial 
 gma-u.5   100786011   tRNase Z TRZ3, mitochondrial 
 gma-u.5   100784996   tRNase Z TRZ3, mitochondrial 
 vvi-u.5   100254820   tRNase Z TRZ3, mitochondrial 
 ppo-u.5   7475087   tRNase Z TRZ3, mitochondrial 
 mtr-u.5   11427220   tRNase Z TRZ3, mitochondrial 
 sly-u.5   101245927   tRNAse Z TRZ4, mitochondrial-like 
 sly-u.5   101243871   tRNase Z TRZ3, mitochondrial 
 sot-r.1   102596953   zinc phosphodiesterase ELAC protein 2-like 
 sot-r.1   102594613   zinc phosphodiesterase ELAC protein 2 
 nta-r.1   107821661   tRNAse Z TRZ4, mitochondrial 
 nta-r.1   107828349   tRNAse Z TRZ4, mitochondrial 
 nta-r.1   107832311   tRNAse Z TRZ4, mitochondrial 
 osa-u.5   4324278   tRNase Z TRZ3, mitochondrial 
 zma-u.5   103635013   tRNase Z TRZ3, mitochondrial 
 tae-r.2   123060809   tRNase Z TRZ3, mitochondrial 
 tae-r.2   123069373   tRNase Z TRZ3, mitochondrial 
 tae-r.2   123077884   tRNase Z TRZ3, mitochondrial 
 hvu-r.1   123443267   tRNase Z TRZ3, mitochondrial-like 
 sbi-r.1   8078098   tRNase Z TRZ3, mitochondrial 
 bdi-r.1   100834590   tRNase Z TRZ3, mitochondrial 
 cre-r.1   CHLRE_01g039900v5   uncharacterized protein 

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Top 50 coexpressed genes to 102625658 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102625658 (cit-r.1 coexpression data)

CoexMap"102625658"


citLOC102625658 | Entrez gene ID : 102625658    
Species cit ath bra ghi bna gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 1 2 2 2 3 2 1 1 1 2 2 3 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1990180 [list] [network] mitochondrial tRNA 3'-end processing  (1 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (512 genes)  IEA  
GO MF
GO:0042781 [list] [network] 3'-tRNA processing endoribonuclease activity  (1 genes)  IEA  
Protein XP_006465656.2 [sequence] [blastp]
XP_052287200.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  chlo_mito 5  (predict for XP_006465656.2)
chlo 8,  chlo_mito 5,  mito 1  (predict for XP_052287200.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_006465656.2)
chlo 8  (predict for XP_052287200.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
102625658
ath-u.5
for
TRZ4
ath-u.5
for
TRZ3
bra-r.6
for
103869840
bra-r.6
for
103871232
ghi-r.1
for
107913895
ghi-r.1
for
107897490
bna-r.1
for
106401888
bna-r.1
for
106406620
bna-r.1
for
106452219
gma-u.5
for
100786011
gma-u.5
for
100784996
vvi-u.5
for
100254820
ppo-u.5
for
7475087
mtr-u.5
for
11427220
sly-u.5
for
101245927
sly-u.5
for
101243871
sot-r.1
for
102596953
sot-r.1
for
102594613
nta-r.1
for
107821661
nta-r.1
for
107828349
nta-r.1
for
107832311
osa-u.5
for
4324278
zma-u.5
for
103635013
tae-r.2
for
123060809
tae-r.2
for
123069373
tae-r.2
for
123077884
hvu-r.1
for
123443267
sbi-r.1
for
8078098
bdi-r.1
for
100834590
cre-r.1
for
CHLRE_01g039900v5


Ortholog ID: 5108
Species cit ath ath bra bra ghi ghi bna bna bna gma gma vvi ppo mtr sly sly sot sot nta nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC102625658 TRZ4 TRZ3 LOC103869840 LOC103871232 LOC107913895 LOC107897490 LOC106401888 LOC106406620 LOC106345746 LOC100786011 LOC100784996 LOC100254820 LOC7475087 LOC11427220 LOC101245927 LOC101243871 LOC102596953 LOC102594613 LOC107821661 LOC107789833 LOC107785747 LOC4324278 LOC103635013 LOC123060809 LOC123069373 LOC123077884 LOC123443267 LOC8078098 LOC100834590 CHLRE_01g039900v5
Function* tRNase Z TRZ3, mitochondrial tRNAse Z4 tRNAse Z3 tRNAse Z TRZ4, mitochondrial tRNase Z TRZ3, mitochondrial tRNase Z TRZ3, mitochondrial tRNase Z TRZ3, mitochondrial tRNAse Z TRZ4, mitochondrial-like tRNase Z TRZ3, mitochondrial-like tRNase Z TRZ3, mitochondrial tRNase Z TRZ3, mitochondrial tRNase Z TRZ3, mitochondrial tRNase Z TRZ3, mitochondrial tRNase Z TRZ3, mitochondrial tRNase Z TRZ3, mitochondrial tRNAse Z TRZ4, mitochondrial-like tRNase Z TRZ3, mitochondrial zinc phosphodiesterase ELAC protein 2-like zinc phosphodiesterase ELAC protein 2 tRNAse Z TRZ4, mitochondrial zinc phosphodiesterase ELAC protein 2-like tRNase Z TRZ3, mitochondrial tRNase Z TRZ3, mitochondrial tRNase Z TRZ3, mitochondrial tRNase Z TRZ3, mitochondrial tRNase Z TRZ3, mitochondrial tRNase Z TRZ3, mitochondrial tRNase Z TRZ3, mitochondrial-like tRNase Z TRZ3, mitochondrial tRNase Z TRZ3, mitochondrial uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
ath03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04146 Peroxisome 2
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 5
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta00190 Oxidative phosphorylation 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 3
osa03420 Nucleotide excision repair 2
osa03013 Nucleocytoplasmic transport 2
osa04141 Protein processing in endoplasmic reticulum 2
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 4
tae03040 Spliceosome 3
tae03272 Virion - Hepatitis viruses 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03272 Virion - Hepatitis viruses 3
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
tae03272 Virion - Hepatitis viruses 3
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
bdi03015 mRNA surveillance pathway 2
bdi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 3
cre03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102625658 820872 841647 103869840 103871232 107913895 107897490 106401888 106406620 106345746 100786011 100784996 100254820 7475087 11427220 101245927 101243871 102596953 102594613 107821661 107789833 107785747 4324278 103635013 123060809 123069373 123077884 123443267 8078098 100834590 5715544
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