ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_12g505700v5	uncharacterized protein
ath-u.5	TBP2	TATA binding protein 2
ath-u.5	TBP1	TATA binding protein 1
gma-u.5	100810845	TATA-box-binding protein
gma-u.5	TBP1	TATA-box binding protein
gma-u.5	100804848	TATA-box-binding protein
sly-u.5	101254627	TATA-box-binding protein
osa-u.5	4352633	TATA-binding protein 2-like
osa-u.5	4348699	TATA-binding protein 2-like
osa-u.5	4333619	TATA-binding protein 2-like
zma-u.5	542240	TATA-binding protein 1
zma-u.5	542241	TATA-binding protein 2
bra-r.6	103832582	TATA-box-binding protein 2
bra-r.6	103829778	TATA-box-binding protein 2
vvi-u.5	100243302	TATA-box-binding protein
ppo-u.5	7453590	uncharacterized LOC7453590
mtr-u.5	25498820	TATA-box-binding protein
mtr-u.5	25489244	TATA-box-binding protein
mtr-u.5	25489234	TATA-box-binding protein
tae-r.2	123119191	TATA-box-binding protein 2-like
tae-r.2	123087351	TATA-box-binding protein 2
tae-r.2	123090582	TATA-box-binding protein 2
hvu-r.1	123452199	TATA-box-binding protein 2-like
hvu-r.1	123446934	TATA-binding protein 2
hvu-r.1	123429269	TATA-box-binding protein 1
ghi-r.1	107942849	TATA-box-binding protein
ghi-r.1	107894606	TATA-box-binding protein
ghi-r.1	107893254	TATA-box-binding protein
bna-r.1	106440595	TATA-box-binding protein 1
bna-r.1	106360359	TATA-box-binding protein 2
sbi-r.1	8056767	TATA-box-binding protein 2
sot-r.1	102596656	TATA-box-binding protein-like
sot-r.1	102583666	TATA-box-binding protein-like
cit-r.1	102614840	TATA-box-binding protein 2
bdi-r.1	100832670	TATA-box-binding protein 1
bdi-r.1	100836217	TATA-binding protein 2
bdi-r.1	100837002	TATA-binding protein 2
nta-r.1	107765382	TATA-box-binding protein
nta-r.1	107789091	TATA-box-binding protein
nta-r.1	107789182	TATA-box-binding protein-like

Top 50 coexpressed genes to CHLRE_12g505700v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_12g505700v5 (cre-r.1 coexpression data)

CoexMap"5716470"

[Cytoscape]

Annotation

functional annotation

KEGG

cre03022 [list] [network] Basal transcription factors (19 genes)

GO BP

GO:0006352 [list] [network] DNA-templated transcription initiation

(39 genes)

IEA

GO CC

GO MF

GO:0016251 [list] [network] RNA polymerase II general transcription initiation factor activity	(14 genes)	IEA
GO:0003677 [list] [network] DNA binding	(670 genes)	IEA

Protein

XP_001691004.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, plas 1, cyto 1, E.R._plas 1, mito 1, pero 1

(predict for XP_001691004.1)

Subcellular
localization
TargetP

other 7, chlo 3

(predict for XP_001691004.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_12g505700v5	ath-u.5 for TBP2	ath-u.5 for TBP1	gma-u.5 for 100810845	gma-u.5 for TBP1	gma-u.5 for 100804848	sly-u.5 for 101254627	osa-u.5 for 4352633	osa-u.5 for 4348699	osa-u.5 for 4333619	zma-u.5 for 542240	zma-u.5 for 542241	bra-r.6 for 103832582	bra-r.6 for 103829778	vvi-u.5 for 100243302	ppo-u.5 for 7453590	mtr-u.5 for 25498820	mtr-u.5 for 25489244	mtr-u.5 for 25489234	tae-r.2 for 123119191	tae-r.2 for 123087351	tae-r.2 for 123090582	hvu-r.1 for 123452199	hvu-r.1 for 123446934	hvu-r.1 for 123429269	ghi-r.1 for 107942849	ghi-r.1 for 107894606	ghi-r.1 for 107893254	bna-r.1 for 106440595	bna-r.1 for 106360359	sbi-r.1 for 8056767	sot-r.1 for 102596656	sot-r.1 for 102583666	cit-r.1 for 102614840	bdi-r.1 for 100832670	bdi-r.1 for 100836217	bdi-r.1 for 100837002	nta-r.1 for 107765382	nta-r.1 for 107789091	nta-r.1 for 107789182

Ortholog

Ortholog ID: 1741

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

CHLRE_12g505700v5

TBP2

TBP1

TBP1

Function^*

uncharacterized protein

TATA binding protein 2

TATA binding protein 1

TATA-box-binding protein

TATA-box binding protein

TATA-box-binding protein

TATA-binding protein 2-like

TATA-binding protein 1

TATA-binding protein 2

TATA-box-binding protein 2

TATA-box-binding protein

uncharacterized LOC7453590

TATA-box-binding protein

TATA-box-binding protein 2

TATA-box-binding protein 2-like

TATA-box-binding protein 2

TATA-box-binding protein 2-like

TATA-binding protein 2

TATA-box-binding protein 1

TATA-box-binding protein

TATA-box-binding protein 2

TATA-box-binding protein 2-like

TATA-box-binding protein 1

TATA-box-binding protein 2

TATA-box-binding protein-like

TATA-box-binding protein 2

TATA-box-binding protein 1

TATA-binding protein 2

TATA-box-binding protein

TATA-box-binding protein-like

Coexmap

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Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	4
cre04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03022	Basal transcription factors	3
ath04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03022	Basal transcription factors	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03022	Basal transcription factors	5
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03022	Basal transcription factors	5
gma03040	Spliceosome	2
gma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	6
osa03022	Basal transcription factors	3
osa03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03022	Basal transcription factors	3
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03022	Basal transcription factors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03022	Basal transcription factors	2
zma04144	Endocytosis	2
zma05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	3
zma03083	Polycomb repressive complex	3
zma04712	Circadian rhythm - plant	3
zma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03022	Basal transcription factors	2
bra04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	2
vvi04141	Protein processing in endoplasmic reticulum	2
vvi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03022	Basal transcription factors	2
ppo04120	Ubiquitin mediated proteolysis	2
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00790	Folate biosynthesis	2
mtr01240	Biosynthesis of cofactors	2
mtr04981	Folate transport and metabolism	2
mtr03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	3
mtr03040	Spliceosome	2
mtr03020	RNA polymerase	2
mtr03420	Nucleotide excision repair	2
mtr03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03022	Basal transcription factors	3
tae03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03022	Basal transcription factors	3
tae04141	Protein processing in endoplasmic reticulum	3
tae04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	5
tae03022	Basal transcription factors	3
tae04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	5
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03022	Basal transcription factors	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03022	Basal transcription factors	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03022	Basal transcription factors	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3
sbi03013	Nucleocytoplasmic transport	2
sbi03022	Basal transcription factors	2
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03022	Basal transcription factors	2
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2
sot03022	Basal transcription factors	2
sot00510	N-Glycan biosynthesis	2
sot00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03022	Basal transcription factors	2
bdi03250	Viral life cycle - HIV-1	2
bdi03272	Virion - Hepatitis viruses	2
bdi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00100	Steroid biosynthesis	4
nta03022	Basal transcription factors	2
nta00440	Phosphonate and phosphinate metabolism	2
nta00564	Glycerophospholipid metabolism	2
nta04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00440	Phosphonate and phosphinate metabolism	4
nta00564	Glycerophospholipid metabolism	4
nta04130	SNARE interactions in vesicular transport	2
nta03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03022	Basal transcription factors	4
nta03040	Spliceosome	2
nta00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

5716470

841999

820546

100810845

547805

100790566

101254627

4352633

4348699

4333619

542240

542241

103832582

103829778

100243302

7453590

25489244

25489234

25491712

123095622

123102038

123110157

123452199

123446934

123429269

107894606

107893254

107899139

106360359

125577229

106452274

8086107

102596656

102583666

102614840

100832670

100836217

100837002

107789091

107789182

142176366

The preparation time of this page was 0.3 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	2	3	1	3	2	2	1	1	3	3	3	3	2	1	2	1	3	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_12g505700v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_12g505700v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**