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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g486100v5   uncharacterized protein 
 ath-u.5   CLPP5   nuclear encoded CLP protease 5 
 gma-u.5   100802533   ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 
 gma-u.5   100798621   ATP-dependent Clp protease proteolytic subunit 5, chloroplastic-like 
 sly-u.5   clpP2   Clp protease 2 proteolytic subunit 
 osa-u.5   4332615   ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 
 zma-u.5   103634566   ATP-dependent Clp protease proteolytic subunit 5, chloroplastic-like 
 zma-u.5   100194286   uncharacterized LOC100194286 
 bra-r.6   103844577   ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 
 bra-r.6   103836649   ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 
 vvi-u.5   100246849   ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 
 ppo-u.5   7455425   ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 
 ppo-u.5   7481404   ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 
 mtr-u.5   11426620   ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 
 mtr-u.5   11412270   ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 
 tae-r.2   123085673   ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 
 tae-r.2   123092330   ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 
 tae-r.2   123097672   ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 
 hvu-r.1   123448819   ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 
 ghi-r.1   107912314   ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 
 ghi-r.1   107924745   ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 
 ghi-r.1   107946002   ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 
 bna-r.1   106370909   ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 
 bna-r.1   125591783   ATP-dependent Clp protease proteolytic subunit 5, chloroplastic-like 
 bna-r.1   106401510   ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 
 sbi-r.1   8083988   ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 
 sot-r.1   102579725   ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 
 cit-r.1   102607512   ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 
 cit-r.1   102622645   ATP-dependent Clp protease proteolytic subunit 5, chloroplastic-like 
 bdi-r.1   100831676   ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 
 nta-r.1   107777151   ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 
 nta-r.1   107760634   ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 
 nta-r.1   107809867   ATP-dependent Clp protease proteolytic subunit 5, chloroplastic 

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Top 50 coexpressed genes to CHLRE_12g486100v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g486100v5 (cre-r.1 coexpression data)

CoexMap"5716620"


creCHLRE_12g486100v5 | Entrez gene ID : 5716620      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 1 1 2 2 1 2 2 3 1 3 3 1 1 2 1 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006515 [list] [network] protein quality control for misfolded or incompletely synthesized proteins  (10 genes)  IEA  
GO CC
GO:0009368 [list] [network] endopeptidase Clp complex  (8 genes)  IEA  
GO MF
GO:0051117 [list] [network] ATPase binding  (11 genes)  IEA  
GO:0004176 [list] [network] ATP-dependent peptidase activity  (22 genes)  IEA  
GO:0004252 [list] [network] serine-type endopeptidase activity  (85 genes)  IEA  
Protein XP_001690891.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  mito 2  (predict for XP_001690891.1)
Subcellular
localization
TargetP
mito 6,  chlo 5  (predict for XP_001690891.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g486100v5
ath-u.5
for
CLPP5
gma-u.5
for
100802533
gma-u.5
for
100798621
sly-u.5
for
clpP2
osa-u.5
for
4332615
zma-u.5
for
103634566
zma-u.5
for
100194286
bra-r.6
for
103844577
bra-r.6
for
103836649
vvi-u.5
for
100246849
ppo-u.5
for
7455425
ppo-u.5
for
7481404
mtr-u.5
for
11426620
mtr-u.5
for
11412270
tae-r.2
for
123085673
tae-r.2
for
123092330
tae-r.2
for
123097672
hvu-r.1
for
123448819
ghi-r.1
for
107912314
ghi-r.1
for
107924745
ghi-r.1
for
107946002
bna-r.1
for
106370909
bna-r.1
for
125591783
bna-r.1
for
106401510
sbi-r.1
for
8083988
sot-r.1
for
102579725
cit-r.1
for
102607512
cit-r.1
for
102622645
bdi-r.1
for
100831676
nta-r.1
for
107777151
nta-r.1
for
107760634
nta-r.1
for
107809867


Ortholog ID: 5417
Species cre ath gma gma sly osa zma zma bra bra vvi ppo ppo mtr mtr tae tae tae hvu ghi ghi ghi bna bna bna sbi sot cit cit bdi nta nta nta
Symbol CHLRE_12g486100v5 CLPP5 LOC100802533 LOC100798621 clpP2 LOC4332615 LOC103634566 LOC100194286 LOC103844577 LOC103836649 LOC100246849 LOC7455425 LOC7481404 LOC11426620 LOC11412270 LOC123085673 LOC123092330 LOC123097672 LOC123448819 LOC107924745 LOC107946002 LOC121210928 LOC106370909 LOC125591783 LOC106401510 LOC8083988 LOC102579725 LOC102607512 LOC102622645 LOC100831676 LOC107777151 LOC107809867 LOC107771859
Function* uncharacterized protein nuclear encoded CLP protease 5 ATP-dependent Clp protease proteolytic subunit 5, chloroplastic ATP-dependent Clp protease proteolytic subunit 5, chloroplastic-like Clp protease 2 proteolytic subunit ATP-dependent Clp protease proteolytic subunit 5, chloroplastic ATP-dependent Clp protease proteolytic subunit 5, chloroplastic-like uncharacterized LOC100194286 ATP-dependent Clp protease proteolytic subunit 5, chloroplastic ATP-dependent Clp protease proteolytic subunit 5, chloroplastic ATP-dependent Clp protease proteolytic subunit 5, chloroplastic ATP-dependent Clp protease proteolytic subunit 5, chloroplastic ATP-dependent Clp protease proteolytic subunit 5, chloroplastic ATP-dependent Clp protease proteolytic subunit 5, chloroplastic ATP-dependent Clp protease proteolytic subunit 5, chloroplastic ATP-dependent Clp protease proteolytic subunit 5, chloroplastic ATP-dependent Clp protease proteolytic subunit 5, chloroplastic ATP-dependent Clp protease proteolytic subunit 5, chloroplastic ATP-dependent Clp protease proteolytic subunit 5, chloroplastic ATP-dependent Clp protease proteolytic subunit 5, chloroplastic ATP-dependent Clp protease proteolytic subunit 5, chloroplastic ATP-dependent Clp protease proteolytic subunit 5, chloroplastic ATP-dependent Clp protease proteolytic subunit 5, chloroplastic ATP-dependent Clp protease proteolytic subunit 5, chloroplastic-like ATP-dependent Clp protease proteolytic subunit 5, chloroplastic ATP-dependent Clp protease proteolytic subunit 5, chloroplastic ATP-dependent Clp protease proteolytic subunit 5, chloroplastic ATP-dependent Clp protease proteolytic subunit 5, chloroplastic ATP-dependent Clp protease proteolytic subunit 5, chloroplastic-like ATP-dependent Clp protease proteolytic subunit 5, chloroplastic ATP-dependent Clp protease proteolytic subunit 5, chloroplastic ATP-dependent Clp protease proteolytic subunit 5, chloroplastic ATP-dependent Clp protease proteolytic subunit 5, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00260 Glycine, serine and threonine metabolism 2
cre01200 Carbon metabolism 2
cre01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00270 Cysteine and methionine metabolism 2
gma00920 Sulfur metabolism 2
gma01200 Carbon metabolism 2
gma01230 Biosynthesis of amino acids 2
gma01320 Sulfur cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04146 Peroxisome 2
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 10
ppo00053 Ascorbate and aldarate metabolism 2
ppo00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
ppo01240 Biosynthesis of cofactors 2
ppo00240 Pyrimidine metabolism 2
ppo01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 3
hvu00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00730 Thiamine metabolism 2
ghi01240 Biosynthesis of cofactors 2
ghi00040 Pentose and glucuronate interconversions 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00480 Glutathione metabolism 2
bna03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00220 Arginine biosynthesis 2
nta00250 Alanine, aspartate and glutamate metabolism 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00220 Arginine biosynthesis 2
nta00250 Alanine, aspartate and glutamate metabolism 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
nta00240 Pyrimidine metabolism 2
nta01240 Biosynthesis of cofactors 2
nta00220 Arginine biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5716620 839433 100802533 100798621 544244 4332615 103634566 100194286 103844577 103836649 100246849 7455425 7481404 11426620 11412270 123085673 123092330 123097672 123448819 107924745 107946002 121210928 106370909 125591783 106401510 8083988 102579725 102607512 102622645 100831676 107777151 107809867 107771859
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