ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_06g307450v5	uncharacterized protein
ath-u.5	AT1G14640	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
ath-u.5	AT1G14650	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein
gma-u.5	100797261	probable splicing factor 3A subunit 1
gma-u.5	100794736	probable splicing factor 3A subunit 1
gma-u.5	100790309	probable splicing factor 3A subunit 1
sly-u.5	101250651	probable splicing factor 3A subunit 1
sly-u.5	101246043	probable splicing factor 3A subunit 1
osa-u.5	4328860	probable splicing factor 3A subunit 1
zma-u.5	103634672	probable splicing factor 3A subunit 1
zma-u.5	100383468	putative splicing factor 3A subunit 1
bra-r.6	103872261	probable splicing factor 3A subunit 1
bra-r.6	103836060	probable splicing factor 3A subunit 1
vvi-u.5	100242352	probable splicing factor 3A subunit 1
ppo-u.5	7486391	probable splicing factor 3A subunit 1
ppo-u.5	7462542	probable splicing factor 3A subunit 1
mtr-u.5	11411169	probable splicing factor 3A subunit 1
tae-r.2	123072629	probable splicing factor 3A subunit 1
tae-r.2	123069635	probable splicing factor 3A subunit 1
tae-r.2	123063528	probable splicing factor 3A subunit 1
hvu-r.1	123445588	probable splicing factor 3A subunit 1
ghi-r.1	107910675	probable splicing factor 3A subunit 1
ghi-r.1	107909985	probable splicing factor 3A subunit 1
bna-r.1	106400860	probable splicing factor 3A subunit 1
bna-r.1	125591709	probable splicing factor 3A subunit 1
sbi-r.1	8054094	probable splicing factor 3A subunit 1
sot-r.1	102594420	probable splicing factor 3A subunit 1
sot-r.1	102591518	probable splicing factor 3A subunit 1
cit-r.1	102619756	probable splicing factor 3A subunit 1
bdi-r.1	100845178	probable splicing factor 3A subunit 1
nta-r.1	107807958	putative splicing factor 3A subunit 1
nta-r.1	107789072	putative splicing factor 3A subunit 1
nta-r.1	107765886	putative splicing factor 3A subunit 1

Top 50 coexpressed genes to CHLRE_06g307450v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_06g307450v5 (cre-r.1 coexpression data)

CoexMap"5716858"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0000381 [list] [network] regulation of alternative mRNA splicing, via spliceosome	(5 genes)	IEA
GO:0045292 [list] [network] mRNA cis splicing, via spliceosome	(14 genes)	IEA

GO CC

GO:0005686 [list] [network] U2 snRNP	(16 genes)	IEA
GO:0071004 [list] [network] U2-type prespliceosome	(17 genes)	IEA
GO:0071013 [list] [network] catalytic step 2 spliceosome	(45 genes)	IEA

GO MF

GO:0003723 [list] [network] RNA binding	(670 genes)	IEA
GO:0005515 [list] [network] protein binding	(1927 genes)	IEA

Protein

XP_042924440.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, nucl 4

(predict for XP_042924440.1)

Subcellular
localization
TargetP

other 8

(predict for XP_042924440.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_06g307450v5	ath-u.5 for AT1G14640	ath-u.5 for AT1G14650	gma-u.5 for 100797261	gma-u.5 for 100794736	gma-u.5 for 100790309	sly-u.5 for 101250651	sly-u.5 for 101246043	osa-u.5 for 4328860	zma-u.5 for 103634672	zma-u.5 for 100383468	bra-r.6 for 103872261	bra-r.6 for 103836060	vvi-u.5 for 100242352	ppo-u.5 for 7486391	ppo-u.5 for 7462542	mtr-u.5 for 11411169	tae-r.2 for 123072629	tae-r.2 for 123069635	tae-r.2 for 123063528	hvu-r.1 for 123445588	ghi-r.1 for 107910675	ghi-r.1 for 107909985	bna-r.1 for 106400860	bna-r.1 for 125591709	sbi-r.1 for 8054094	sot-r.1 for 102594420	sot-r.1 for 102591518	cit-r.1 for 102619756	bdi-r.1 for 100845178	nta-r.1 for 107807958	nta-r.1 for 107789072	nta-r.1 for 107765886

Ortholog

Ortholog ID: 5406

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

SWAP (Suppressor-of-White-APricot)/surp domain-containing protein

SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein

probable splicing factor 3A subunit 1

putative splicing factor 3A subunit 1

probable splicing factor 3A subunit 1

putative splicing factor 3A subunit 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	4
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	11
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3
bra03050	Proteasome	2
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	6
ppo03013	Nucleocytoplasmic transport	3
ppo03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	6
ppo03013	Nucleocytoplasmic transport	3
ppo03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	7
tae03013	Nucleocytoplasmic transport	3
tae03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	4
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4
bna03250	Viral life cycle - HIV-1	3
bna03015	mRNA surveillance pathway	2
bna03022	Basal transcription factors	2
bna03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4
bna03015	mRNA surveillance pathway	4
bna03022	Basal transcription factors	2
bna03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4
cit03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	5
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	5
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	5
nta03013	Nucleocytoplasmic transport	2

Expression

Expression pattern

Entrez Gene ID^*

5716858

838026

838027

100797261

100794736

100790309

101250651

101246043

4328860

103634672

100383468

103872261

103836060

100242352

7486391

7462542

11411169

123072629

123069635

123080815

123445588

107910675

107909985

106400860

106362115

8054094

102594420

102591518

102619756

100845178

107807958

107789072

107765886

The preparation time of this page was 0.1 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	2	3	2	1	2	2	1	2	1	3	1	2	2	1	2	1	1	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_06g307450v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_06g307450v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**