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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106400860   probable splicing factor 3A subunit 1 
 ath-u.5   AT1G14640   SWAP (Suppressor-of-White-APricot)/surp domain-containing protein 
 ath-u.5   AT1G14650   SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein 
 gma-u.5   100797261   probable splicing factor 3A subunit 1 
 gma-u.5   100794736   probable splicing factor 3A subunit 1 
 gma-u.5   100790309   probable splicing factor 3A subunit 1 
 vvi-u.5   100242352   probable splicing factor 3A subunit 1 
 ppo-u.5   7462542   probable splicing factor 3A subunit 1 
 ppo-u.5   7486391   probable splicing factor 3A subunit 1 
 mtr-u.5   11411169   probable splicing factor 3A subunit 1 
 sly-u.5   101246043   probable splicing factor 3A subunit 1 
 sly-u.5   101250651   probable splicing factor 3A subunit 1 
 osa-u.5   4328860   probable splicing factor 3A subunit 1 
 zma-u.5   103634672   probable splicing factor 3A subunit 1 
 zma-u.5   100383468   putative splicing factor 3A subunit 1 

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Top 50 coexpressed genes to 106400860 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106400860 (bna-r.1 coexpression data)

CoexMap"106400860"


bnaLOC106400860 | Entrez gene ID : 106400860    
Species bna ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae ghi
Paralog 1 2 3 1 2 1 2 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03040 [list] [network] Spliceosome (912 genes)
GO BP
GO:0000381 [list] [network] regulation of alternative mRNA splicing, via spliceosome  (27 genes)  IEA  
GO:0045292 [list] [network] mRNA cis splicing, via spliceosome  (62 genes)  IEA  
GO CC
GO:0005686 [list] [network] U2 snRNP  (88 genes)  IEA  
GO:0071004 [list] [network] U2-type prespliceosome  (106 genes)  IEA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (222 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3852 genes)  IEA  
GO:0005515 [list] [network] protein binding  (12789 genes)  IEA  
Protein XP_048614044.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 4  (predict for XP_048614044.1)
Subcellular
localization
TargetP
other 5,  chlo 5  (predict for XP_048614044.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106400860

.
ath-u.5
for
AT1G14640

.
ath-u.5
for
AT1G14650

.
gma-u.5
for
100797261

.
gma-u.5
for
100794736

.
gma-u.5
for
100790309

.
vvi-u.5
for
100242352

.
ppo-u.5
for
7462542

.
ppo-u.5
for
7486391

.
mtr-u.5
for
11411169

.
sly-u.5
for
101246043

.
sly-u.5
for
101250651

.
osa-u.5
for
4328860

.
zma-u.5
for
103634672

.
zma-u.5
for
100383468

.


Ortholog ID: 5406
Species ath ath gma gma sly sly osa zma zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna cre sbi sot sot cit bdi nta nta
Symbol AT1G14640 AT1G14650 LOC100790309 LOC100797261 LOC101246043 LOC101250651 LOC4328860 LOC100383468 LOC103634672 LOC103872261 LOC103836060 LOC100242352 LOC7462542 LOC7486391 LOC11411169 LOC123080815 LOC123072629 LOC123445588 LOC107910675 LOC107909985 LOC106362115 CHLRE_06g307450v5 LOC8054094 LOC102591518 LOC102594420 LOC102619756 LOC100845178 LOC107789072 LOC107765886
Function* SWAP (Suppressor-of-White-APricot)/surp domain-containing protein SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein probable splicing factor 3A subunit 1 probable splicing factor 3A subunit 1 probable splicing factor 3A subunit 1 probable splicing factor 3A subunit 1 probable splicing factor 3A subunit 1 putative splicing factor 3A subunit 1 probable splicing factor 3A subunit 1 probable splicing factor 3A subunit 1 probable splicing factor 3A subunit 1 probable splicing factor 3A subunit 1 probable splicing factor 3A subunit 1 probable splicing factor 3A subunit 1 probable splicing factor 3A subunit 1 probable splicing factor 3A subunit 1 probable splicing factor 3A subunit 1 probable splicing factor 3A subunit 1 probable splicing factor 3A subunit 1 probable splicing factor 3A subunit 1 probable splicing factor 3A subunit 1 uncharacterized protein probable splicing factor 3A subunit 1 probable splicing factor 3A subunit 1 probable splicing factor 3A subunit 1 probable splicing factor 3A subunit 1 probable splicing factor 3A subunit 1 putative splicing factor 3A subunit 1 putative splicing factor 3A subunit 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 11
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03050 Proteasome 2
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
ppo03013 Nucleocytoplasmic transport 3
ppo03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
ppo03013 Nucleocytoplasmic transport 3
ppo03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna03015 mRNA surveillance pathway 4
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838026 838027 100790309 100797261 101246043 101250651 4328860 100383468 103634672 103872261 103836060 100242352 7462542 7486391 11411169 123080815 123072629 123445588 107910675 107909985 106362115 5716858 8054094 102591518 102594420 102619756 100845178 107789072 107765886
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