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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_04g219750v5   uncharacterized protein 
 ath-u.5   RECQ4A   DNA helicase (RECQl4A) 
 ath-u.5   RECQ4B   RECQ helicase L4B 
 gma-u.5   100800006   ATP-dependent DNA helicase Q-like 4A 
 gma-u.5   100817867   ATP-dependent DNA helicase Q-like 4A 
 sly-u.5   101260976   ATP-dependent DNA helicase Q-like 4A 
 osa-u.5   4335888   ATP-dependent DNA helicase Q-like 4A 
 zma-u.5   100274706   ATP-dependent DNA helicase Q-like 4A 
 bra-r.6   103843270   ATP-dependent DNA helicase Q-like 4A 
 bra-r.6   103838471   ATP-dependent DNA helicase Q-like 4B 
 vvi-u.5   100245652   ATP-dependent DNA helicase Q-like 4A 
 mtr-u.5   11419769   ATP-dependent DNA helicase Q-like 4A 
 tae-r.2   123045493   ATP-dependent DNA helicase Q-like 4A 
 tae-r.2   123189243   ATP-dependent DNA helicase Q-like 4A 
 tae-r.2   123053342   ATP-dependent DNA helicase Q-like 4A 
 hvu-r.1   123426758   ATP-dependent DNA helicase Q-like 4A 
 ghi-r.1   107919835   ATP-dependent DNA helicase Q-like 4A 
 ghi-r.1   107894237   ATP-dependent DNA helicase Q-like 4A 
 bna-r.1   106451717   ATP-dependent DNA helicase Q-like 4A 
 bna-r.1   106447917   ATP-dependent DNA helicase Q-like 4B 
 bna-r.1   106420196   ATP-dependent DNA helicase Q-like 4A 
 sbi-r.1   8057544   ATP-dependent DNA helicase Q-like 4A 
 sot-r.1   102601604   ATP-dependent DNA helicase Q-like 4A 
 cit-r.1   102610752   ATP-dependent DNA helicase Q-like 4A 
 bdi-r.1   100841605   ATP-dependent DNA helicase Q-like 4A 
 nta-r.1   107821048   ATP-dependent DNA helicase Q-like 4A 
 nta-r.1   107765327   ATP-dependent DNA helicase Q-like 4A 

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Top 50 coexpressed genes to CHLRE_04g219750v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_04g219750v5 (cre-r.1 coexpression data)

CoexMap"5717851"


creCHLRE_04g219750v5 | Entrez gene ID : 5717851    
Species cre ath gma sly osa zma bra vvi mtr tae hvu ghi bna sbi sot cit bdi nta ppo
Paralog 1 2 2 1 1 1 2 1 1 3 1 2 3 1 1 1 1 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03440 [list] [network] Homologous recombination (15 genes)
cre03460 [list] [network] Fanconi anemia pathway (16 genes)
GO BP
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (82 genes)  IEA  
GO:0006260 [list] [network] DNA replication  (93 genes)  IEA  
GO CC
GO:0005694 [list] [network] chromosome  (334 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (2907 genes)  IEA  
GO MF
GO:0009378 [list] [network] four-way junction helicase activity  (7 genes)  IEA  
GO:0043138 [list] [network] 3'-5' DNA helicase activity  (16 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (1484 genes)  IEA  
Protein XP_042925217.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  pero 2,  chlo 1,  cyto_pero 1  (predict for XP_042925217.1)
Subcellular
localization
TargetP
mito 5,  other 4  (predict for XP_042925217.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_04g219750v5
ath-u.5
for
RECQ4A
ath-u.5
for
RECQ4B
gma-u.5
for
100800006
gma-u.5
for
100817867
sly-u.5
for
101260976
osa-u.5
for
4335888
zma-u.5
for
100274706
bra-r.6
for
103843270
bra-r.6
for
103838471
vvi-u.5
for
100245652
mtr-u.5
for
11419769
tae-r.2
for
123045493
tae-r.2
for
123189243
tae-r.2
for
123053342
hvu-r.1
for
123426758
ghi-r.1
for
107919835
ghi-r.1
for
107894237
bna-r.1
for
106451717
bna-r.1
for
106447917
bna-r.1
for
106420196
sbi-r.1
for
8057544
sot-r.1
for
102601604
cit-r.1
for
102610752
bdi-r.1
for
100841605
nta-r.1
for
107821048
nta-r.1
for
107765327


Ortholog ID: 7026
Species cre ath ath gma gma sly osa zma bra bra vvi mtr tae tae tae hvu ghi ghi bna bna bna sbi sot cit bdi nta nta
Symbol CHLRE_04g219750v5 RECQ4A RECQ4B LOC100800006 LOC100817867 LOC101260976 LOC4335888 LOC100274706 LOC103843270 LOC103838471 LOC100245652 LOC11419769 LOC123045493 LOC123189243 LOC123053342 LOC123426758 LOC107919835 LOC107894237 LOC106451717 LOC106447917 LOC106362128 LOC8057544 LOC102601604 LOC102610752 LOC100841605 LOC107821048 LOC107765327
Function* uncharacterized protein DNA helicase (RECQl4A) RECQ helicase L4B ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4B ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4B ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 2
ath03460 Fanconi anemia pathway 2
ath04814 Motor proteins 2
ath00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04814 Motor proteins 2
ath03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03460 Fanconi anemia pathway 4
gma03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03460 Fanconi anemia pathway 5
gma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 3
sly03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03460 Fanconi anemia pathway 2
osa03030 DNA replication 2
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 5
vvi03420 Nucleotide excision repair 3
vvi03410 Base excision repair 2
vvi03430 Mismatch repair 2
vvi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04814 Motor proteins 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 11
tae03440 Homologous recombination 3
tae03460 Fanconi anemia pathway 3
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 10
tae03440 Homologous recombination 3
tae03460 Fanconi anemia pathway 3
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 11
tae03440 Homologous recombination 7
tae03410 Base excision repair 5
tae03420 Nucleotide excision repair 5
tae03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 4
ghi04814 Motor proteins 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 3
ghi04814 Motor proteins 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 4
bna03460 Fanconi anemia pathway 4
bna00240 Pyrimidine metabolism 2
bna01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 4
bna03460 Fanconi anemia pathway 4
bna00240 Pyrimidine metabolism 2
bna01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03440 Homologous recombination 3
sot03430 Mismatch repair 2
sot03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03030 DNA replication 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 3
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 4
nta03440 Homologous recombination 3
nta00010 Glycolysis / Gluconeogenesis 2
nta00710 Carbon fixation by Calvin cycle 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 5
nta03460 Fanconi anemia pathway 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5717851 837636 842384 100800006 100817867 101260976 4335888 100274706 103843270 103838471 100245652 11419769 123045493 123189243 123053342 123426758 107919835 107894237 106451717 106447917 106362128 8057544 102601604 102610752 100841605 107821048 107765327
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