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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_14g625802v5   uncharacterized protein 
 ath-u.5   HUB1   histone mono-ubiquitination 1 
 ath-u.5   HUB2   histone mono-ubiquitination 2 
 gma-u.5   100796610   E3 ubiquitin-protein ligase BRE1-like 2 
 gma-u.5   100790744   E3 ubiquitin-protein ligase BRE1-like 1 
 gma-u.5   100811776   E3 ubiquitin-protein ligase BRE1-like 2 
 sly-u.5   101254859   E3 ubiquitin-protein ligase BRE1-like 1 
 sly-u.5   101264751   E3 ubiquitin-protein ligase BRE1-like 2 
 osa-u.5   4336589   E3 ubiquitin-protein ligase BRE1-like 1 
 osa-u.5   4349420   E3 ubiquitin-protein ligase BRE1-like 2 
 zma-u.5   103629598   E3 ubiquitin-protein ligase BRE1-like 1 
 zma-u.5   100274688   uncharacterized LOC100274688 
 zma-u.5   103626393   E3 ubiquitin-protein ligase BRE1-like 1 
 bra-r.6   103866851   E3 ubiquitin-protein ligase BRE1-like 1 
 bra-r.6   103832600   E3 ubiquitin-protein ligase BRE1-like 2 
 bra-r.6   103866184   E3 ubiquitin-protein ligase BRE1-like 1 
 vvi-u.5   100251829   E3 ubiquitin-protein ligase BRE1-like 2 
 vvi-u.5   100241021   E3 ubiquitin-protein ligase BRE1-like 1 
 ppo-u.5   7455740   E3 ubiquitin-protein ligase BRE1-like 2 
 ppo-u.5   18105143   E3 ubiquitin-protein ligase BRE1-like 1 
 mtr-u.5   25484108   E3 ubiquitin-protein ligase BRE1-like 2 
 mtr-u.5   11438680   E3 ubiquitin-protein ligase BRE1-like 2 
 mtr-u.5   25494911   E3 ubiquitin-protein ligase BRE1-like 2 
 tae-r.2   123071466   E3 ubiquitin-protein ligase BRE1-like 1 
 tae-r.2   123076543   E3 ubiquitin-protein ligase BRE1-like 2 
 tae-r.2   123080550   E3 ubiquitin-protein ligase BRE1-like 2 
 hvu-r.1   123404399   E3 ubiquitin-protein ligase BRE1-like 1 
 hvu-r.1   123445404   E3 ubiquitin-protein ligase BRE1-like 2 
 hvu-r.1   123444859   E3 ubiquitin-protein ligase BRE1-like 1 
 ghi-r.1   121223688   E3 ubiquitin-protein ligase BRE1-like 1 
 ghi-r.1   107937439   E3 ubiquitin-protein ligase BRE1-like 1 
 ghi-r.1   107933771   E3 ubiquitin-protein ligase BRE1-like 1 
 bna-r.1   106396402   E3 ubiquitin-protein ligase BRE1-like 1 
 bna-r.1   106371217   E3 ubiquitin-protein ligase BRE1-like 1 
 bna-r.1   106433603   E3 ubiquitin-protein ligase BRE1-like 2 
 sbi-r.1   8063816   E3 ubiquitin-protein ligase BRE1-like 1 
 sbi-r.1   8066523   E3 ubiquitin-protein ligase BRE1-like 2 
 sot-r.1   102583070   E3 ubiquitin-protein ligase BRE1-like 1 
 sot-r.1   102579128   E3 ubiquitin-protein ligase BRE1-like 2 
 cit-r.1   102612288   E3 ubiquitin-protein ligase BRE1-like 1 
 cit-r.1   102624474   E3 ubiquitin-protein ligase BRE1-like 2 
 bdi-r.1   100828493   E3 ubiquitin-protein ligase BRE1-like 2 
 bdi-r.1   100825148   E3 ubiquitin-protein ligase BRE1-like 1 
 nta-r.1   107766185   E3 ubiquitin-protein ligase BRE1-like 1 
 nta-r.1   107793770   E3 ubiquitin-protein ligase BRE1-like 2 
 nta-r.1   107793416   E3 ubiquitin-protein ligase BRE1-like 1 

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Top 50 coexpressed genes to CHLRE_14g625802v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_14g625802v5 (cre-r.1 coexpression data)

CoexMap"5718396"


creCHLRE_14g625802v5 | Entrez gene ID : 5718396    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 2 3 2 2 3 3 2 2 3 3 3 3 3 2 2 2 2 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0033503 [list] [network] HULC complex  (1 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (65 genes)  IEA  
Protein XP_042916946.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 2,  cyto_pero 2,  cyto_plas 2  (predict for XP_042916946.1)
Subcellular
localization
TargetP
other 7  (predict for XP_042916946.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_14g625802v5
ath-u.5
for
HUB1
ath-u.5
for
HUB2
gma-u.5
for
100796610
gma-u.5
for
100790744
gma-u.5
for
100811776
sly-u.5
for
101254859
sly-u.5
for
101264751
osa-u.5
for
4336589
osa-u.5
for
4349420
zma-u.5
for
103629598
zma-u.5
for
100274688
zma-u.5
for
103626393
bra-r.6
for
103866851
bra-r.6
for
103832600
bra-r.6
for
103866184
vvi-u.5
for
100251829
vvi-u.5
for
100241021
ppo-u.5
for
7455740
ppo-u.5
for
18105143
mtr-u.5
for
25484108
mtr-u.5
for
11438680
mtr-u.5
for
25494911
tae-r.2
for
123071466
tae-r.2
for
123076543
tae-r.2
for
123080550
hvu-r.1
for
123404399
hvu-r.1
for
123445404
hvu-r.1
for
123444859
ghi-r.1
for
121223688
ghi-r.1
for
107937439
ghi-r.1
for
107933771
bna-r.1
for
106396402
bna-r.1
for
106371217
bna-r.1
for
106433603
sbi-r.1
for
8063816
sbi-r.1
for
8066523
sot-r.1
for
102583070
sot-r.1
for
102579128
cit-r.1
for
102612288
cit-r.1
for
102624474
bdi-r.1
for
100828493
bdi-r.1
for
100825148
nta-r.1
for
107766185
nta-r.1
for
107793770
nta-r.1
for
107793416


Ortholog ID: 1919
Species cre ath ath gma gma gma sly sly osa osa zma zma zma bra bra bra vvi vvi ppo ppo mtr mtr mtr tae tae tae hvu hvu hvu ghi ghi ghi bna bna bna sbi sbi sot sot cit cit bdi bdi nta nta nta
Symbol CHLRE_14g625802v5 HUB1 HUB2 LOC100796610 LOC100811776 LOC100790337 LOC101254859 LOC101264751 LOC4336589 LOC4349420 LOC103629598 LOC100274688 LOC103626393 LOC103866851 LOC103832600 LOC103866184 LOC100251829 LOC100241021 LOC18105143 LOC7453935 LOC25484108 LOC11438680 LOC11436813 LOC123063337 LOC123072319 LOC123145047 LOC123404399 LOC123445404 LOC123444859 LOC121223688 LOC107923465 LOC121219845 LOC106433603 LOC106443573 LOC106450768 LOC8063816 LOC8066523 LOC102583070 LOC102579128 LOC102612288 LOC102624474 LOC100828493 LOC100825148 LOC107793770 LOC107793416 LOC107783068
Function* uncharacterized protein histone mono-ubiquitination 1 histone mono-ubiquitination 2 E3 ubiquitin-protein ligase BRE1-like 2 E3 ubiquitin-protein ligase BRE1-like 2 E3 ubiquitin-protein ligase BRE1-like 1 E3 ubiquitin-protein ligase BRE1-like 1 E3 ubiquitin-protein ligase BRE1-like 2 E3 ubiquitin-protein ligase BRE1-like 1 E3 ubiquitin-protein ligase BRE1-like 2 E3 ubiquitin-protein ligase BRE1-like 1 uncharacterized LOC100274688 E3 ubiquitin-protein ligase BRE1-like 1 E3 ubiquitin-protein ligase BRE1-like 1 E3 ubiquitin-protein ligase BRE1-like 2 E3 ubiquitin-protein ligase BRE1-like 1 E3 ubiquitin-protein ligase BRE1-like 2 E3 ubiquitin-protein ligase BRE1-like 1 E3 ubiquitin-protein ligase BRE1-like 1 E3 ubiquitin-protein ligase BRE1-like 1 E3 ubiquitin-protein ligase BRE1-like 2 E3 ubiquitin-protein ligase BRE1-like 2 E3 ubiquitin-protein ligase BRE1-like 1 E3 ubiquitin-protein ligase BRE1-like 2 E3 ubiquitin-protein ligase BRE1-like 2 E3 ubiquitin-protein ligase BRE1-like 1 E3 ubiquitin-protein ligase BRE1-like 1 E3 ubiquitin-protein ligase BRE1-like 2 E3 ubiquitin-protein ligase BRE1-like 1 E3 ubiquitin-protein ligase BRE1-like 1 E3 ubiquitin-protein ligase BRE1-like 1 E3 ubiquitin-protein ligase BRE1-like 1 E3 ubiquitin-protein ligase BRE1-like 2 E3 ubiquitin-protein ligase BRE1-like 2 E3 ubiquitin-protein ligase BRE1-like 1 E3 ubiquitin-protein ligase BRE1-like 1 E3 ubiquitin-protein ligase BRE1-like 2 E3 ubiquitin-protein ligase BRE1-like 1 E3 ubiquitin-protein ligase BRE1-like 2 E3 ubiquitin-protein ligase BRE1-like 1 E3 ubiquitin-protein ligase BRE1-like 2 E3 ubiquitin-protein ligase BRE1-like 2 E3 ubiquitin-protein ligase BRE1-like 1 E3 ubiquitin-protein ligase BRE1-like 2 E3 ubiquitin-protein ligase BRE1-like 1 E3 ubiquitin-protein ligase BRE1-like 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03013 Nucleocytoplasmic transport 3
ath03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03083 Polycomb repressive complex 3
zma03013 Nucleocytoplasmic transport 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 3
bra03040 Spliceosome 3
bra03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03013 Nucleocytoplasmic transport 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03013 Nucleocytoplasmic transport 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
tae03250 Viral life cycle - HIV-1 3
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 6
bdi03040 Spliceosome 4
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5718396 819104 841968 100796610 100811776 100790337 101254859 101264751 4336589 4349420 103629598 100274688 103626393 103866851 103832600 103866184 100251829 100241021 18105143 7453935 25484108 11438680 11436813 123063337 123072319 123145047 123404399 123445404 123444859 121223688 107923465 121219845 106433603 106443573 106450768 8063816 8066523 102583070 102579128 102612288 102624474 100828493 100825148 107793770 107793416 107783068
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