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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_13g563150v5   uncharacterized protein 
 ath-u.5   AT2G23370   cyclin delta-3 
 ath-u.5   AT4G34090   cyclin delta-3 
 gma-u.5   100809304   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 gma-u.5   100800367   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 sly-u.5   101267465   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 osa-u.5   4331348   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 zma-u.5   100193975   uncharacterized LOC100193975 
 bra-r.6   103862318   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 bra-r.6   103842416   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 vvi-u.5   100268130   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 vvi-u.5   100250309   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 ppo-u.5   7490044   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 ppo-u.5   7483102   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 mtr-u.5   11427177   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 tae-r.2   123106170   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 tae-r.2   123099207   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 tae-r.2   123094017   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 hvu-r.1   123450047   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic-like 
 ghi-r.1   121212215   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 ghi-r.1   107913228   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 ghi-r.1   107898227   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 bna-r.1   106441141   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic-like 
 bna-r.1   106436716   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 bna-r.1   106368647   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic-like 
 sbi-r.1   8078020   uncharacterized LOC8078020 
 sot-r.1   102583668   uncharacterized LOC102583668 
 cit-r.1   102619583   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic-like 
 cit-r.1   102617893   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic-like 
 bdi-r.1   100833623   uncharacterized LOC100833623 
 nta-r.1   107815685   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 
 nta-r.1   107806111   protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic 

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Top 50 coexpressed genes to CHLRE_13g563150v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_13g563150v5 (cre-r.1 coexpression data)

CoexMap"5718982"


creCHLRE_13g563150v5 | Entrez gene ID : 5718982      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 2 2 1 1 1 2 2 2 1 3 1 3 3 1 1 2 1 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
Protein XP_001693659.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  chlo_mito 5,  mito 4  (predict for XP_001693659.1)
Subcellular
localization
TargetP
mito 7  (predict for XP_001693659.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_13g563150v5
ath-u.5
for
AT2G23370
ath-u.5
for
AT4G34090
gma-u.5
for
100809304
gma-u.5
for
100800367
sly-u.5
for
101267465
osa-u.5
for
4331348
zma-u.5
for
100193975
bra-r.6
for
103862318
bra-r.6
for
103842416
vvi-u.5
for
100268130
vvi-u.5
for
100250309
ppo-u.5
for
7490044
ppo-u.5
for
7483102
mtr-u.5
for
11427177
tae-r.2
for
123106170
tae-r.2
for
123099207
tae-r.2
for
123094017
hvu-r.1
for
123450047
ghi-r.1
for
121212215
ghi-r.1
for
107913228
ghi-r.1
for
107898227
bna-r.1
for
106441141
bna-r.1
for
106436716
bna-r.1
for
106368647
sbi-r.1
for
8078020
sot-r.1
for
102583668
cit-r.1
for
102619583
cit-r.1
for
102617893
bdi-r.1
for
100833623
nta-r.1
for
107815685
nta-r.1
for
107806111


Ortholog ID: 6498
Species cre ath ath gma gma sly osa zma bra bra vvi vvi ppo ppo mtr tae tae tae hvu ghi ghi ghi bna bna bna sbi sot cit cit bdi nta nta
Symbol CHLRE_13g563150v5 AT2G23370 AT4G34090 LOC100809304 LOC100800367 LOC101267465 LOC4331348 LOC100193975 LOC103862318 LOC103842416 LOC100268130 LOC100250309 LOC7490044 LOC7483102 LOC11427177 LOC123106170 LOC123099207 LOC123094017 LOC123450047 LOC121212215 LOC107913228 LOC107894286 LOC106441141 LOC106436716 LOC106368647 LOC8078020 LOC102583668 LOC102619583 LOC102617893 LOC100833623 LOC107815685 LOC107806111
Function* uncharacterized protein cyclin delta-3 cyclin delta-3 protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic uncharacterized LOC100193975 protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic-like protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic-like protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic-like uncharacterized LOC8078020 uncharacterized LOC102583668 protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic-like protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic-like uncharacterized LOC100833623 protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic protein IN CHLOROPLAST ATPASE BIOGENESIS, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03015 mRNA surveillance pathway 3
ath03060 Protein export 2
ath03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 3
sly00710 Carbon fixation by Calvin cycle 2
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 3
zma00970 Aminoacyl-tRNA biosynthesis 3
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00860 Porphyrin metabolism 2
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
ppo00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00860 Porphyrin metabolism 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 5
tae00710 Carbon fixation by Calvin cycle 4
tae01200 Carbon metabolism 4
tae01230 Biosynthesis of amino acids 4
tae00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00280 Valine, leucine and isoleucine degradation 3
tae00650 Butanoate metabolism 3
tae00900 Terpenoid backbone biosynthesis 3
tae01240 Biosynthesis of cofactors 3
tae00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 5
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
tae04146 Peroxisome 3
tae00710 Carbon fixation by Calvin cycle 2
tae01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00860 Porphyrin metabolism 2
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi03060 Protein export 2
ghi00230 Purine metabolism 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 6
sot00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00500 Starch and sucrose metabolism 2
bdi00220 Arginine biosynthesis 2
bdi00330 Arginine and proline metabolism 2
bdi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta00010 Glycolysis / Gluconeogenesis 2
nta00020 Citrate cycle (TCA cycle) 2
nta00260 Glycine, serine and threonine metabolism 2
nta00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5718982 816869 829555 100809304 100800367 101267465 4331348 100193975 103862318 103842416 100268130 100250309 7490044 7483102 11427177 123106170 123099207 123094017 123450047 121212215 107913228 107894286 106441141 106436716 106368647 8078020 102583668 102619583 102617893 100833623 107815685 107806111
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