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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1  CHLRE_13g576250v5  uncharacterized protein 
 ath-u.5  AT3G49410  Transcription factor IIIC, subunit 5 
 ath-u.5  AT5G24450  Transcription factor IIIC, subunit 5 
 gma-u.5  100819979  general transcription factor 3C polypeptide 5 
 sly-u.5  101264493  uncharacterized LOC101264493 
 osa-u.5  4323940  uncharacterized LOC4323940 
 zma-u.5  100192729  uncharacterized LOC100192729 
 bra-r.6  103875342  general transcription factor 3C polypeptide 5 
 bra-r.6  103854858  general transcription factor 3C polypeptide 5 
 vvi-u.5  100247425  uncharacterized LOC100247425 
 ppo-u.5  7465611  uncharacterized LOC7465611 
 mtr-u.5  11409861  general transcription factor 3C polypeptide 5 
 tae-r.2  123066744  general transcription factor 3C polypeptide 5 
 tae-r.2  123182947  general transcription factor 3C polypeptide 5 
 tae-r.2  123144203  general transcription factor 3C polypeptide 5 
 hvu-r.1  123449368  general transcription factor 3C polypeptide 5-like 
 ghi-r.1  107946819  general transcription factor 3C polypeptide 5 
 ghi-r.1  107913018  general transcription factor 3C polypeptide 5 
 bna-r.1  125581996  general transcription factor 3C polypeptide 5-like 
 bna-r.1  125581995  general transcription factor 3C polypeptide 5-like 
 bna-r.1  106423965  general transcription factor 3C polypeptide 5 
 sbi-r.1  8063766  general transcription factor 3C polypeptide 5 
 sot-r.1  102591133  general transcription factor 3C polypeptide 5-like 
 cit-r.1  102610199  uncharacterized LOC102610199 
 bdi-r.1  100838866  general transcription factor 3C polypeptide 5 
 nta-r.1  107812107  uncharacterized LOC107812107 
 nta-r.1  107800139  uncharacterized LOC107800139 
 nta-r.1  107773035  uncharacterized LOC107773035 

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Top 50 coexpressed genes to CHLRE_13g576250v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_13g576250v5 (cre-r.1 coexpression data)

CoexMap"5719238"


creCHLRE_13g576250v5 | Entrez gene ID : 5719238
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 2 1 1 1 1 2 1 1 1 3 1 2 3 1 1 1 1 3
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006384 [list] [network] transcription initiation at RNA polymerase III promoter  (5 genes)  IEA  
GO CC
GO:0000127 [list] [network] transcription factor TFIIIC complex  (4 genes)  IEA  
GO MF
Protein XP_042917437.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 3,  cyto_pero 2,  mito 1,  plas 1,  E.R. 1,  E.R._plas 1,  mito_plas 1  (predict for XP_042917437.1)
Subcellular
localization
TargetP
other 8  (predict for XP_042917437.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Reference

cre-r.1
for
CHLRE_13g576250v5


ath-u.5
for
AT3G49410


ath-u.5
for
AT5G24450


gma-u.5
for
100819979


sly-u.5
for
101264493


osa-u.5
for
4323940


zma-u.5
for
100192729


bra-r.6
for
103875342


bra-r.6
for
103854858


vvi-u.5
for
100247425


ppo-u.5
for
7465611


mtr-u.5
for
11409861


tae-r.2
for
123066744


tae-r.2
for
123182947


tae-r.2
for
123144203


hvu-r.1
for
123449368


ghi-r.1
for
107946819


ghi-r.1
for
107913018


bna-r.1
for
125581996


bna-r.1
for
125581995


bna-r.1
for
106423965


sbi-r.1
for
8063766


sot-r.1
for
102591133


cit-r.1
for
102610199


bdi-r.1
for
100838866


nta-r.1
for
107812107


nta-r.1
for
107800139


nta-r.1
for
107773035



Ortholog ID: 6016
Species cre ath ath gma sly osa zma bra bra vvi ppo mtr tae tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta nta
Symbol CHLRE_13g576250v5 AT3G49410 AT5G24450 LOC100819979 LOC101264493 LOC4323940 LOC100192729 LOC103875342 LOC103854858 LOC100247425 LOC7465611 LOC11409861 LOC123066744 LOC123182947 LOC123144203 LOC123449368 LOC107946819 LOC107913018 LOC106423965 LOC106382605 LOC8063766 LOC102591133 LOC102610199 LOC100838866 LOC107812107 LOC107800139 LOC107773035
Function* uncharacterized protein Transcription factor IIIC, subunit 5 Transcription factor IIIC, subunit 5 general transcription factor 3C polypeptide 5 uncharacterized LOC101264493 uncharacterized LOC4323940 uncharacterized LOC100192729 general transcription factor 3C polypeptide 5 general transcription factor 3C polypeptide 5 uncharacterized LOC100247425 uncharacterized LOC7465611 general transcription factor 3C polypeptide 5 general transcription factor 3C polypeptide 5 general transcription factor 3C polypeptide 5 general transcription factor 3C polypeptide 5 general transcription factor 3C polypeptide 5-like general transcription factor 3C polypeptide 5 general transcription factor 3C polypeptide 5 general transcription factor 3C polypeptide 5 general transcription factor 3C polypeptide 5-like general transcription factor 3C polypeptide 5 general transcription factor 3C polypeptide 5-like uncharacterized LOC102610199 general transcription factor 3C polypeptide 5 uncharacterized LOC107812107 uncharacterized LOC107800139 uncharacterized LOC107773035
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 3
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03022 Basal transcription factors 2
sly04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03440 Homologous recombination 2
vvi03460 Fanconi anemia pathway 2
vvi04814 Motor proteins 2
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00600 Sphingolipid metabolism 2
mtr04382 Cornified envelope formation 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
cit03040 Spliceosome 2
cit03022 Basal transcription factors 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5719238 824103 832516 100819979 101264493 4323940 100192729 103875342 103854858 100247425 7465611 11409861 123066744 123182947 123144203 123449368 107946819 107913018 106423965 106382605 8063766 102591133 102610199 100838866 107812107 107800139 107773035
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