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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g543100v5   uncharacterized protein 
 ath-u.5   AT2G45730   eukaryotic initiation factor 3 gamma subunit family protein 
 gma-u.5   100788691   tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 
 gma-u.5   100783601   tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 
 sly-u.5   101261023   uncharacterized LOC101261023 
 osa-u.5   4334938   uncharacterized LOC4334938 
 zma-u.5   103650815   tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 
 bra-r.6   103866230   tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 
 bra-r.6   103858188   tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 
 vvi-u.5   100252255   uncharacterized LOC100252255 
 ppo-u.5   7479683   uncharacterized LOC7479683 
 mtr-u.5   11419256   tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 
 tae-r.2   123050935   tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 
 tae-r.2   123057555   tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 
 hvu-r.1   123431459   tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6-like 
 hvu-r.1   123442524   tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6-like 
 ghi-r.1   107905504   tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 
 ghi-r.1   107958229   tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 
 bna-r.1   106438259   tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 
 bna-r.1   106452171   tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 
 bna-r.1   106392046   tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6-like 
 sbi-r.1   8081301   tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 
 sot-r.1   102594727   tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 
 cit-r.1   102625894   uncharacterized LOC102625894 
 bdi-r.1   100844528   tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 
 nta-r.1   107781701   uncharacterized LOC107781701 

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Top 50 coexpressed genes to CHLRE_12g543100v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g543100v5 (cre-r.1 coexpression data)

CoexMap"5719536"


creCHLRE_12g543100v5 | Entrez gene ID : 5719536    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 1 1 1 2 1 1 1 2 2 2 3 1 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0030488 [list] [network] tRNA methylation  (34 genes)  IEA  
GO CC
GO:0031515 [list] [network] tRNA (m1A) methyltransferase complex  (2 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
Protein XP_042919165.1 [sequence] [blastp]
Subcellular
localization
wolf
E.R. 3,  nucl 3,  E.R._plas 2,  plas 1,  chlo 1,  cyto 1,  mito 1,  pero 1,  chlo_mito 1,  cyto_pero 1  (predict for XP_042919165.1)
Subcellular
localization
TargetP
other 8  (predict for XP_042919165.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g543100v5
ath-u.5
for
AT2G45730
gma-u.5
for
100788691
gma-u.5
for
100783601
sly-u.5
for
101261023
osa-u.5
for
4334938
zma-u.5
for
103650815
bra-r.6
for
103866230
bra-r.6
for
103858188
vvi-u.5
for
100252255
ppo-u.5
for
7479683
mtr-u.5
for
11419256
tae-r.2
for
123050935
tae-r.2
for
123057555
hvu-r.1
for
123431459
hvu-r.1
for
123442524
ghi-r.1
for
107905504
ghi-r.1
for
107958229
bna-r.1
for
106438259
bna-r.1
for
106452171
bna-r.1
for
106392046
sbi-r.1
for
8081301
sot-r.1
for
102594727
cit-r.1
for
102625894
bdi-r.1
for
100844528
nta-r.1
for
107781701


Ortholog ID: 6529
Species cre ath gma gma sly osa zma bra bra vvi ppo mtr tae tae hvu hvu ghi ghi bna bna bna sbi sot cit bdi nta
Symbol CHLRE_12g543100v5 AT2G45730 LOC100788691 LOC100783601 LOC101261023 LOC4334938 LOC103650815 LOC103866230 LOC103858188 LOC100252255 LOC7479683 LOC11419256 LOC123073675 LOC123172206 LOC123431459 LOC123442524 LOC107905504 LOC107958229 LOC106438259 LOC106452171 LOC106429641 LOC8081301 LOC102594727 LOC102625894 LOC100844528 LOC107781701
Function* uncharacterized protein eukaryotic initiation factor 3 gamma subunit family protein tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 uncharacterized LOC101261023 uncharacterized LOC4334938 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 uncharacterized LOC100252255 uncharacterized LOC7479683 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6-like tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6-like tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6-like tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 uncharacterized LOC102625894 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 uncharacterized LOC107781701
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 2
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 9
mtr00020 Citrate cycle (TCA cycle) 7
mtr01210 2-Oxocarboxylic acid metabolism 6
mtr00010 Glycolysis / Gluconeogenesis 4
mtr00785 Lipoic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 2
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
hvu03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03010 Ribosome 3
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
sot03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 5
bdi03020 RNA polymerase 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 3
nta03008 Ribosome biogenesis in eukaryotes 3
nta00230 Purine metabolism 2
nta01232 Nucleotide metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5719536 819181 100788691 100783601 101261023 4334938 103650815 103866230 103858188 100252255 7479683 11419256 123073675 123172206 123431459 123442524 107905504 107958229 106438259 106452171 106429641 8081301 102594727 102625894 100844528 107781701
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