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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106438259   tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 
 ath-u.5   AT2G45730   eukaryotic initiation factor 3 gamma subunit family protein 
 gma-u.5   100788691   tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 
 gma-u.5   100783601   tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 
 vvi-u.5   100252255   uncharacterized LOC100252255 
 ppo-u.5   7479683   uncharacterized LOC7479683 
 mtr-u.5   11419256   tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 
 sly-u.5   101261023   uncharacterized LOC101261023 
 osa-u.5   4334938   uncharacterized LOC4334938 
 zma-u.5   103650815   tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 

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Top 50 coexpressed genes to 106438259 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106438259 (bna-r.1 coexpression data)

CoexMap"106438259"


bnaLOC106438259 | Entrez gene ID : 106438259    
Species bna ath gma vvi ppo mtr sly osa zma bdi hvu bra cit sbi ghi sot nta cre tae
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0030488 [list] [network] tRNA methylation  (67 genes)  IEA  
GO CC
GO:0031515 [list] [network] tRNA (m1A) methyltransferase complex  (7 genes)  IEA  
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
Protein XP_013734820.2 [sequence] [blastp]
XP_013734821.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 3,  plas 1,  cysk 1,  cysk_plas 1  (predict for XP_013734820.2)
nucl 7,  cyto 1,  plas 1,  cysk 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1  (predict for XP_013734821.2)
Subcellular
localization
TargetP
other 9  (predict for XP_013734820.2)
other 9  (predict for XP_013734821.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106438259
ath-u.5
for
AT2G45730
gma-u.5
for
100788691
gma-u.5
for
100783601
vvi-u.5
for
100252255
ppo-u.5
for
7479683
mtr-u.5
for
11419256
sly-u.5
for
101261023
osa-u.5
for
4334938
zma-u.5
for
103650815


Ortholog ID: 6529
Species bna bna bra bra ath ghi ghi cit gma gma vvi ppo mtr sly sot nta osa zma tae hvu hvu sbi bdi cre
Symbol LOC106438259 LOC106429641 LOC103858188 LOC103866230 AT2G45730 LOC107958229 LOC107905504 LOC102625894 LOC100788691 LOC100783601 LOC100252255 LOC7479683 LOC11419256 LOC101261023 LOC102594727 LOC107781701 LOC4334938 LOC103650815 LOC123172206 LOC123431459 LOC123442524 LOC8081301 LOC100844528 CHLRE_12g543100v5
Function* tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6-like tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 eukaryotic initiation factor 3 gamma subunit family protein tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 uncharacterized LOC102625894 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 uncharacterized LOC100252255 uncharacterized LOC7479683 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 uncharacterized LOC101261023 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 uncharacterized LOC107781701 uncharacterized LOC4334938 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6-like tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6-like tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03010 Ribosome 3
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 2
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 9
mtr00020 Citrate cycle (TCA cycle) 7
mtr01210 2-Oxocarboxylic acid metabolism 6
mtr00010 Glycolysis / Gluconeogenesis 4
mtr00785 Lipoic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
sot03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 3
nta03008 Ribosome biogenesis in eukaryotes 3
nta00230 Purine metabolism 2
nta01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 2
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
hvu03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 5
bdi03020 RNA polymerase 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106438259 106429641 103858188 103866230 819181 107958229 107905504 102625894 100788691 100783601 100252255 7479683 11419256 101261023 102594727 107781701 4334938 103650815 123172206 123431459 123442524 8081301 100844528 5719536
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