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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g546700v5   uncharacterized protein 
 ath-u.5   EMB140   EMBRYO DEFECTIVE 140 
 gma-u.5   100801333   squamous cell carcinoma antigen recognized by T-cells 3 
 gma-u.5   100794881   squamous cell carcinoma antigen recognized by T-cells 3 
 sly-u.5   101254341   uncharacterized LOC101254341 
 osa-u.5   4344498   uncharacterized LOC4344498 
 zma-u.5   100216679   EMBRYO DEFECTIVE 140 
 bra-r.6   103861930   squamous cell carcinoma antigen recognized by T-cells 3 
 vvi-u.5   109123390   uncharacterized LOC109123390 
 vvi-u.5   100262646   uncharacterized LOC100262646 
 ppo-u.5   18098375   uncharacterized LOC18098375 
 mtr-u.5   25500419   squamous cell carcinoma antigen recognized by T-cells 3 
 tae-r.2   123156255   squamous cell carcinoma antigen recognized by T-cells 3 
 tae-r.2   123147583   squamous cell carcinoma antigen recognized by T-cells 3 
 tae-r.2   123169772   squamous cell carcinoma antigen recognized by T-cells 3 
 hvu-r.1   123408517   squamous cell carcinoma antigen recognized by T-cells 3 
 ghi-r.1   107958523   squamous cell carcinoma antigen recognized by T-cells 3 
 ghi-r.1   107906307   squamous cell carcinoma antigen recognized by T-cells 3 
 ghi-r.1   107914196   squamous cell carcinoma antigen recognized by T-cells 3 
 bna-r.1   106415583   squamous cell carcinoma antigen recognized by T-cells 3 
 bna-r.1   106376032   squamous cell carcinoma antigen recognized by T-cells 3 
 sbi-r.1   110436958   squamous cell carcinoma antigen recognized by T-cells 3 
 sot-r.1   102601827   squamous cell carcinoma antigen recognized by T-cells 3 
 cit-r.1   102627232   uncharacterized LOC102627232 
 bdi-r.1   100845498   squamous cell carcinoma antigen recognized by T-cells 3 
 nta-r.1   107803306   uncharacterized LOC107803306 
 nta-r.1   107775018   uncharacterized LOC107775018 

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Top 50 coexpressed genes to CHLRE_12g546700v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g546700v5 (cre-r.1 coexpression data)

CoexMap"5719592"


creCHLRE_12g546700v5 | Entrez gene ID : 5719592    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 1 1 1 1 2 1 1 3 1 3 2 1 1 1 1 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006396 [list] [network] RNA processing  (507 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_042919088.1 [sequence] [blastp]
XP_042919089.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  nucl 2,  cyto 2,  cyto_nucl 2,  cyto_mito 2,  mito_plas 2  (predict for XP_042919088.1)
mito 5,  nucl 2,  cyto 1,  chlo 1,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_042919089.1)
Subcellular
localization
TargetP
other 8  (predict for XP_042919088.1)
other 8  (predict for XP_042919089.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g546700v5
ath-u.5
for
EMB140
gma-u.5
for
100801333
gma-u.5
for
100794881
sly-u.5
for
101254341
osa-u.5
for
4344498
zma-u.5
for
100216679
bra-r.6
for
103861930
vvi-u.5
for
109123390
vvi-u.5
for
100262646
ppo-u.5
for
18098375
mtr-u.5
for
25500419
tae-r.2
for
123156255
tae-r.2
for
123147583
tae-r.2
for
123169772
hvu-r.1
for
123408517
ghi-r.1
for
107958523
ghi-r.1
for
107906307
ghi-r.1
for
107914196
bna-r.1
for
106415583
bna-r.1
for
106376032
sbi-r.1
for
110436958
sot-r.1
for
102601827
cit-r.1
for
102627232
bdi-r.1
for
100845498
nta-r.1
for
107803306
nta-r.1
for
107775018


Ortholog ID: 9044
Species cre ath gma gma sly osa zma bra vvi vvi ppo mtr tae tae tae hvu ghi ghi ghi bna bna sbi sot cit bdi nta nta
Symbol CHLRE_12g546700v5 EMB140 LOC100801333 LOC100794881 LOC101254341 LOC4344498 LOC100216679 LOC103861930 LOC109123390 LOC100262646 LOC18098375 LOC25500419 LOC123156255 LOC123147583 LOC123169772 LOC123408517 LOC107958523 LOC107906307 LOC107914196 LOC106415583 LOC106376032 LOC110436958 LOC102601827 LOC102627232 LOC100845498 LOC107803306 LOC107775018
Function* uncharacterized protein EMBRYO DEFECTIVE 140 squamous cell carcinoma antigen recognized by T-cells 3 squamous cell carcinoma antigen recognized by T-cells 3 uncharacterized LOC101254341 uncharacterized LOC4344498 EMBRYO DEFECTIVE 140 squamous cell carcinoma antigen recognized by T-cells 3 uncharacterized LOC109123390 uncharacterized LOC100262646 uncharacterized LOC18098375 squamous cell carcinoma antigen recognized by T-cells 3 squamous cell carcinoma antigen recognized by T-cells 3 squamous cell carcinoma antigen recognized by T-cells 3 squamous cell carcinoma antigen recognized by T-cells 3 squamous cell carcinoma antigen recognized by T-cells 3 squamous cell carcinoma antigen recognized by T-cells 3 squamous cell carcinoma antigen recognized by T-cells 3 squamous cell carcinoma antigen recognized by T-cells 3 squamous cell carcinoma antigen recognized by T-cells 3 squamous cell carcinoma antigen recognized by T-cells 3 squamous cell carcinoma antigen recognized by T-cells 3 squamous cell carcinoma antigen recognized by T-cells 3 uncharacterized LOC102627232 squamous cell carcinoma antigen recognized by T-cells 3 uncharacterized LOC107803306 uncharacterized LOC107775018
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 5
ath03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00340 Histidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
osa03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
bra03082 ATP-dependent chromatin remodeling 3
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 3
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
nta03420 Nucleotide excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5719592 828529 100801333 100794881 101254341 4344498 100216679 103861930 109123390 100262646 18098375 25500419 123156255 123147583 123169772 123408517 107958523 107906307 107914196 106415583 106376032 110436958 102601827 102627232 100845498 107803306 107775018
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