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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g556050v5   uncharacterized protein 
 ath-u.5   RPL9   ribosomal protein L9 
 gma-u.5   100500390   50S ribosomal protein L9, chloroplastic 
 gma-u.5   100500279   uncharacterized LOC100500279 
 sly-u.5   101262888   large ribosomal subunit protein bL9c 
 osa-u.5   4331189   large ribosomal subunit protein bL9c 
 zma-u.5   100285012   50S ribosomal protein L9 
 bra-r.6   103873073   50S ribosomal protein L9, chloroplastic 
 vvi-u.5   100251697   large ribosomal subunit protein bL9c 
 ppo-u.5   18098255   50S ribosomal protein L9, chloroplastic 
 mtr-u.5   11405919   50S ribosomal protein L9, chloroplastic 
 tae-r.2   123129097   50S ribosomal protein L9, chloroplastic-like 
 tae-r.2   123146264   50S ribosomal protein L9, chloroplastic-like 
 tae-r.2   543077   50S ribosomal protein L9, chloroplastic-like 
 hvu-r.1   123401651   50S ribosomal protein L9, chloroplastic 
 ghi-r.1   107906638   50S ribosomal protein L9, chloroplastic 
 ghi-r.1   121229293   50S ribosomal protein L9, chloroplastic 
 bna-r.1   106428563   50S ribosomal protein L9, chloroplastic 
 bna-r.1   111214963   50S ribosomal protein L9, chloroplastic-like 
 sbi-r.1   8056405   50S ribosomal protein L9, chloroplastic 
 sot-r.1   102606429   50S ribosomal protein L9, chloroplastic 
 cit-r.1   102626054   50S ribosomal protein L9, chloroplastic 
 bdi-r.1   100845905   50S ribosomal protein L9, chloroplastic 
 nta-r.1   107817294   large ribosomal subunit protein bL9c-like 
 nta-r.1   107799768   large ribosomal subunit protein bL9c 

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Top 50 coexpressed genes to CHLRE_12g556050v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g556050v5 (cre-r.1 coexpression data)

CoexMap"5719747"


creCHLRE_12g556050v5 | Entrez gene ID : 5719747      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 1 1 1 1 1 1 1 3 1 2 2 1 1 1 1 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03010 [list] [network] Ribosome (149 genes)
GO BP
GO:0006412 [list] [network] translation  (268 genes)  IEA  
GO CC
GO:0005840 [list] [network] ribosome  (168 genes)  IEA  
GO:0005739 [list] [network] mitochondrion  (441 genes)  IEA  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (164 genes)  IEA  
Protein XP_001694174.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 4,  cyto 1  (predict for XP_001694174.2)
Subcellular
localization
TargetP
mito 5  (predict for XP_001694174.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g556050v5
ath-u.5
for
RPL9
gma-u.5
for
100500390
gma-u.5
for
100500279
sly-u.5
for
101262888
osa-u.5
for
4331189
zma-u.5
for
100285012
bra-r.6
for
103873073
vvi-u.5
for
100251697
ppo-u.5
for
18098255
mtr-u.5
for
11405919
tae-r.2
for
123129097
tae-r.2
for
123146264
tae-r.2
for
543077
hvu-r.1
for
123401651
ghi-r.1
for
107906638
ghi-r.1
for
121229293
bna-r.1
for
106428563
bna-r.1
for
111214963
sbi-r.1
for
8056405
sot-r.1
for
102606429
cit-r.1
for
102626054
bdi-r.1
for
100845905
nta-r.1
for
107817294
nta-r.1
for
107799768


Ortholog ID: 10129
Species cre ath gma gma sly osa zma bra vvi ppo mtr tae tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol CHLRE_12g556050v5 RPL9 LOC100500390 LOC100500279 LOC101262888 LOC4331189 LOC100285012 LOC103873073 LOC100251697 LOC18098255 LOC11405919 LOC123129097 LOC123146264 LOC543077 LOC123401651 LOC107906638 LOC121229293 LOC106428563 LOC111214963 LOC8056405 LOC102606429 LOC102626054 LOC100845905 LOC107817294 LOC107799768
Function* uncharacterized protein ribosomal protein L9 50S ribosomal protein L9, chloroplastic uncharacterized LOC100500279 large ribosomal subunit protein bL9c large ribosomal subunit protein bL9c 50S ribosomal protein L9 50S ribosomal protein L9, chloroplastic large ribosomal subunit protein bL9c 50S ribosomal protein L9, chloroplastic 50S ribosomal protein L9, chloroplastic 50S ribosomal protein L9, chloroplastic-like 50S ribosomal protein L9, chloroplastic-like 50S ribosomal protein L9, chloroplastic-like 50S ribosomal protein L9, chloroplastic 50S ribosomal protein L9, chloroplastic 50S ribosomal protein L9, chloroplastic 50S ribosomal protein L9, chloroplastic 50S ribosomal protein L9, chloroplastic-like 50S ribosomal protein L9, chloroplastic 50S ribosomal protein L9, chloroplastic 50S ribosomal protein L9, chloroplastic 50S ribosomal protein L9, chloroplastic large ribosomal subunit protein bL9c-like large ribosomal subunit protein bL9c
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 10
sly00860 Porphyrin metabolism 3
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 13
bra00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
mtr00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 12
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 13
nta03060 Protein export 3
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 10
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5719747 823623 100500390 100500279 101262888 4331189 100285012 103873073 100251697 18098255 11405919 123129097 123146264 543077 123401651 107906638 121229293 106428563 111214963 8056405 102606429 102626054 100845905 107817294 107799768
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