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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_09g388060v5   uncharacterized protein 
 ath-u.5   AT2G21860   violaxanthin de-epoxidase-like protein 
 gma-u.5   100812383   uncharacterized LOC100812383 
 sly-u.5   101260129   uncharacterized LOC101260129 
 osa-u.5   4325583   uncharacterized LOC4325583 
 zma-u.5   100381876   violaxanthin de-epoxidase3 
 bra-r.6   103864298   uncharacterized LOC103864298 
 vvi-u.5   100259321   uncharacterized LOC100259321 
 ppo-u.5   7477136   violaxanthin de-epoxidase, chloroplastic 
 mtr-u.5   11427448   violaxanthin de-epoxidase, chloroplastic 
 tae-r.2   123078792   violaxanthin de-epoxidase, chloroplastic 
 tae-r.2   123070342   violaxanthin de-epoxidase, chloroplastic 
 tae-r.2   123061692   violaxanthin de-epoxidase, chloroplastic 
 hvu-r.1   123444277   violaxanthin de-epoxidase, chloroplastic 
 ghi-r.1   107950602   uncharacterized LOC107950602 
 ghi-r.1   121210213   violaxanthin de-epoxidase, chloroplastic 
 bna-r.1   BNACNNG13890D   uncharacterized BNACNNG13890D 
 bna-r.1   106420766   uncharacterized LOC106420766 
 sbi-r.1   8069798   violaxanthin de-epoxidase, chloroplastic 
 sot-r.1   102595436   uncharacterized LOC102595436 
 sot-r.1   102606421   uncharacterized LOC102606421 
 cit-r.1   102626038   uncharacterized LOC102626038 
 bdi-r.1   100823768   uncharacterized LOC100823768 
 nta-r.1   107800328   violaxanthin de-epoxidase, chloroplastic-like 
 nta-r.1   107788911   violaxanthin de-epoxidase, chloroplastic-like 

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Top 50 coexpressed genes to CHLRE_09g388060v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_09g388060v5 (cre-r.1 coexpression data)

CoexMap"5720579"


creCHLRE_09g388060v5 | Entrez gene ID : 5720579    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 1 1 1 1 1 1 1 1 3 1 2 2 1 2 1 1 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010028 [list] [network] xanthophyll cycle  (1 genes)  IEA  
GO CC
GO MF
GO:0046422 [list] [network] violaxanthin de-epoxidase activity  (1 genes)  IEA  
Protein XP_042921086.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  mito 2,  E.R. 1,  mito_plas 1,  nucl 1,  cyto_mito 1,  cysk_nucl 1,  E.R._vacu 1,  E.R._plas 1  (predict for XP_042921086.1)
Subcellular
localization
TargetP
mito 7  (predict for XP_042921086.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_09g388060v5
ath-u.5
for
AT2G21860
gma-u.5
for
100812383
sly-u.5
for
101260129
osa-u.5
for
4325583
zma-u.5
for
100381876
bra-r.6
for
103864298
vvi-u.5
for
100259321
ppo-u.5
for
7477136
mtr-u.5
for
11427448
tae-r.2
for
123078792
tae-r.2
for
123070342
tae-r.2
for
123061692
hvu-r.1
for
123444277
ghi-r.1
for
107950602
ghi-r.1
for
121210213
bna-r.1
for
BNACNNG13890D
bna-r.1
for
106420766
sbi-r.1
for
8069798
sot-r.1
for
102595436
sot-r.1
for
102606421
cit-r.1
for
102626038
bdi-r.1
for
100823768
nta-r.1
for
107800328
nta-r.1
for
107788911


Ortholog ID: 9992
Species cre ath gma sly osa zma bra vvi ppo mtr tae tae tae hvu ghi ghi bna bna sbi sot sot cit bdi nta nta
Symbol CHLRE_09g388060v5 AT2G21860 LOC100812383 LOC101260129 LOC4325583 LOC100381876 LOC103864298 LOC100259321 LOC7477136 LOC11427448 LOC123078792 LOC123070342 LOC123061692 LOC123444277 LOC107950602 LOC121210213 BNACNNG13890D LOC106420766 LOC8069798 LOC102595436 LOC102606421 LOC102626038 LOC100823768 LOC107800328 LOC107788911
Function* uncharacterized protein violaxanthin de-epoxidase-like protein uncharacterized LOC100812383 uncharacterized LOC101260129 uncharacterized LOC4325583 violaxanthin de-epoxidase3 uncharacterized LOC103864298 uncharacterized LOC100259321 violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase, chloroplastic uncharacterized LOC107950602 violaxanthin de-epoxidase, chloroplastic uncharacterized BNACNNG13890D uncharacterized LOC106420766 violaxanthin de-epoxidase, chloroplastic uncharacterized LOC102595436 uncharacterized LOC102606421 uncharacterized LOC102626038 uncharacterized LOC100823768 violaxanthin de-epoxidase, chloroplastic-like violaxanthin de-epoxidase, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00230 Purine metabolism 2
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa04141 Protein processing in endoplasmic reticulum 3
osa04144 Endocytosis 2
osa04626 Plant-pathogen interaction 2
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00230 Purine metabolism 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00230 Purine metabolism 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00230 Purine metabolism 6
tae00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta04141 Protein processing in endoplasmic reticulum 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta04141 Protein processing in endoplasmic reticulum 2
nta04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5720579 816722 100812383 101260129 4325583 100381876 103864298 100259321 7477136 11427448 123078792 123070342 123061692 123444277 107950602 121210213 106376934 106420766 8069798 102595436 102606421 102626038 100823768 107800328 107788911
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