ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_06g283900v5	uncharacterized protein
cre-r.1	CHLRE_06g299350v5	uncharacterized protein
ath-u.5	AT1G32127	plant viral-response family protein
ath-u.5	AT1G55240	proteinase inhibitor I4, serpin (DUF716)
gma-u.5	100813958	uncharacterized LOC100813958
gma-u.5	100813776	transmembrane protein 45A
gma-u.5	100811854	transmembrane protein 45A
sly-u.5	101248128	uncharacterized LOC101248128
sly-u.5	101251133	uncharacterized LOC101251133
sly-u.5	101255720	uncharacterized LOC101255720
osa-u.5	4345775	uncharacterized LOC4345775
osa-u.5	4347194	uncharacterized LOC4347194
zma-u.5	100191315	uncharacterized LOC100191315
zma-u.5	100272958	Plant viral-response family protein-like
zma-u.5	100280959	plant viral-response family protein
bra-r.6	103832942	transmembrane protein 45B
vvi-u.5	100262067	uncharacterized LOC100262067
ppo-u.5	7491893	uncharacterized LOC7491893
ppo-u.5	7455741	uncharacterized LOC7455741
ppo-u.5	7463592	uncharacterized LOC7463592
mtr-u.5	11416941	transmembrane protein 45B
mtr-u.5	25501558	transmembrane protein 45B
mtr-u.5	11407665	transmembrane protein 45B
tae-r.2	123042112	transmembrane protein 45A
hvu-r.1	123445385	transmembrane protein 45A
hvu-r.1	123397502	uncharacterized LOC123397502
ghi-r.1	107929461	transmembrane protein 45A
ghi-r.1	107925565	transmembrane protein 45A
ghi-r.1	107914273	transmembrane protein 45A
bna-r.1	111200273	transmembrane protein 45B-like
sbi-r.1	8081012	uncharacterized LOC8081012
sot-r.1	102579654	transmembrane protein 45A-like
sot-r.1	102584913	transmembrane protein 45A
sot-r.1	102586016	transmembrane protein 45B-like
cit-r.1	102624193	hypothetical protein
cit-r.1	102619991	uncharacterized LOC102619991
cit-r.1	102612249	uncharacterized LOC102612249
bdi-r.1	100829430	transmembrane protein 45A
nta-r.1	107786533	uncharacterized LOC107786533
nta-r.1	107790791	uncharacterized LOC107790791

Top 50 coexpressed genes to CHLRE_06g283900v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_06g283900v5 (cre-r.1 coexpression data)

CoexMap"5720969"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_042924013.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 3, plas 3, cyto_plas 3, pero 1, golg_plas 1, cysk_plas 1

(predict for XP_042924013.1)

Subcellular
localization
TargetP

other 9

(predict for XP_042924013.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_06g283900v5	cre-r.1 for CHLRE_06g299350v5	ath-u.5 for AT1G32127	ath-u.5 for AT1G55240	gma-u.5 for 100813958	gma-u.5 for 100813776	gma-u.5 for 100811854	sly-u.5 for 101248128	sly-u.5 for 101251133	sly-u.5 for 101255720	osa-u.5 for 4345775	osa-u.5 for 4347194	zma-u.5 for 100191315	zma-u.5 for 100272958	zma-u.5 for 100280959	bra-r.6 for 103832942	vvi-u.5 for 100262067	ppo-u.5 for 7491893	ppo-u.5 for 7455741	ppo-u.5 for 7463592	mtr-u.5 for 11416941	mtr-u.5 for 25501558	mtr-u.5 for 11407665	tae-r.2 for 123042112	hvu-r.1 for 123445385	hvu-r.1 for 123397502	ghi-r.1 for 107929461	ghi-r.1 for 107925565	ghi-r.1 for 107914273	bna-r.1 for 111200273	sbi-r.1 for 8081012	sot-r.1 for 102579654	sot-r.1 for 102584913	sot-r.1 for 102586016	cit-r.1 for 102624193	cit-r.1 for 102619991	cit-r.1 for 102612249	bdi-r.1 for 100829430	nta-r.1 for 107786533	nta-r.1 for 107790791

Ortholog

Ortholog ID: 444

Species

cre

ath

gma

sly

osa

zma

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

plant viral-response family protein

transmembrane epididymal protein (DUF716)

transmembrane protein 45B

transmembrane protein 45A

uncharacterized LOC101255720

uncharacterized LOC101260335

uncharacterized LOC101265158

uncharacterized LOC4347194

uncharacterized LOC4347195

uncharacterized LOC100191315

Plant viral-response family protein-like

uncharacterized LOC100285697

uncharacterized LOC100245283

uncharacterized LOC100255325

uncharacterized LOC7491893

uncharacterized LOC7456409

uncharacterized LOC18094084

transmembrane protein 45B

uncharacterized LOC25485582

transmembrane protein 45A

uncharacterized LOC123430212

transmembrane protein 45A

transmembrane protein 45B

transmembrane protein 45A

transmembrane protein 45B-like

transmembrane protein 45B

transmembrane protein 45A

transmembrane protein 45A-like

transmembrane protein 45A

transmembrane protein 45B-like

uncharacterized LOC102619991

uncharacterized LOC102612249

transmembrane protein 45A

uncharacterized LOC107786533

uncharacterized LOC107783214

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	3
ath01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03083	Polycomb repressive complex	2
gma04120	Ubiquitin mediated proteolysis	2
gma04141	Protein processing in endoplasmic reticulum	2
gma00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00514	Other types of O-glycan biosynthesis	4
gma00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04016	MAPK signaling pathway - plant	3
sly00520	Amino sugar and nucleotide sugar metabolism	2
sly00908	Zeatin biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00480	Glutathione metabolism	3
zma00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00910	Nitrogen metabolism	2
vvi01310	Nitrogen cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01240	Biosynthesis of cofactors	4
ppo00520	Amino sugar and nucleotide sugar metabolism	2
ppo01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00051	Fructose and mannose metabolism	2
mtr00564	Glycerophospholipid metabolism	2
mtr00565	Ether lipid metabolism	2
mtr04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00230	Purine metabolism	3
tae00250	Alanine, aspartate and glutamate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00460	Cyanoamino acid metabolism	2
ghi00500	Starch and sucrose metabolism	2
ghi00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00480	Glutathione metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	3
sot04016	MAPK signaling pathway - plant	2
sot04075	Plant hormone signal transduction	2
sot04626	Plant-pathogen interaction	2
sot00360	Phenylalanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03022	Basal transcription factors	2
cit04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00062	Fatty acid elongation	3
bdi04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	3
nta03015	mRNA surveillance pathway	2
nta00600	Sphingolipid metabolism	2
nta04382	Cornified envelope formation	2
nta04120	Ubiquitin mediated proteolysis	2

Expression

Expression pattern

Entrez Gene ID^*

5720969

5716997

28717288

841370

100808451

100807467

100809246

101255720

101260335

101265158

4347194

4347195

100191315

100272958

100285697

100245283

100255325

7491893

7456409

18094084

11407665

25485582

123072292

123063312

123430212

107914273

107900672

107938841

111200273

111200270

125587719

8062757

8079131

102579654

102584913

102586016

102619991

102612249

100829430

100826875

107786533

107783214

The preparation time of this page was 0.2 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	2	2	3	3	2	3	1	1	3	3	1	2	3	1	1	3	3	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_06g283900v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_06g283900v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**