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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_08g368950v5   uncharacterized protein 
 ath-u.5   AT5G66120   3-dehydroquinate synthase 
 gma-u.5   100812989   3-dehydroquinate synthase-like 
 gma-u.5   100806628   3-dehydroquinate synthase 
 sly-u.5   DHQS   dehydroquinate synthase 
 osa-u.5   4347717   3-dehydroquinate synthase, chloroplastic 
 zma-u.5   100283288   3-dehydroquinate synthase 
 zma-u.5   100272979   3-dehydroquinate synthase 
 bra-r.6   103837671   3-dehydroquinate synthase, chloroplastic 
 vvi-u.5   100266137   3-dehydroquinate synthase-like 
 ppo-u.5   18099163   3-dehydroquinate synthase, chloroplastic 
 mtr-u.5   11420575   3-dehydroquinate synthase, chloroplastic 
 tae-r.2   123122392   3-dehydroquinate synthase, chloroplastic 
 tae-r.2   123112886   3-dehydroquinate synthase, chloroplastic 
 tae-r.2   123104614   3-dehydroquinate synthase, chloroplastic 
 hvu-r.1   123400170   3-dehydroquinate synthase, chloroplastic 
 ghi-r.1   107945797   3-dehydroquinate synthase, chloroplastic 
 ghi-r.1   121211306   3-dehydroquinate synthase, chloroplastic 
 bna-r.1   106366334   3-dehydroquinate synthase, chloroplastic 
 bna-r.1   106392246   3-dehydroquinate synthase, chloroplastic 
 sbi-r.1   8063321   3-dehydroquinate synthase, chloroplastic 
 sot-r.1   102598775   3-dehydroquinate synthase, chloroplastic 
 cit-r.1   102631297   3-dehydroquinate synthase, chloroplastic 
 bdi-r.1   100834750   3-dehydroquinate synthase, chloroplastic 
 bdi-r.1   100834447   3-dehydroquinate synthase, chloroplastic 
 nta-r.1   107787846   3-dehydroquinate synthase, chloroplastic 
 nta-r.1   107768348   3-dehydroquinate synthase, chloroplastic 

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Top 50 coexpressed genes to CHLRE_08g368950v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_08g368950v5 (cre-r.1 coexpression data)

CoexMap"5721715"


creCHLRE_08g368950v5 | Entrez gene ID : 5721715      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 1 1 2 1 1 1 1 3 1 2 2 1 1 1 2 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (21 genes)
cre01230 [list] [network] Biosynthesis of amino acids (116 genes)
GO BP
GO:0009073 [list] [network] aromatic amino acid family biosynthetic process  (25 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (2907 genes)  IEA  
GO MF
GO:0003856 [list] [network] 3-dehydroquinate synthase activity  (2 genes)  IEA  
Protein XP_001696076.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 5,  chlo_mito 5  (predict for XP_001696076.1)
Subcellular
localization
TargetP
chlo 4  (predict for XP_001696076.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_08g368950v5
ath-u.5
for
AT5G66120
gma-u.5
for
100812989
gma-u.5
for
100806628
sly-u.5
for
DHQS
osa-u.5
for
4347717
zma-u.5
for
100283288
zma-u.5
for
100272979
bra-r.6
for
103837671
vvi-u.5
for
100266137
ppo-u.5
for
18099163
mtr-u.5
for
11420575
tae-r.2
for
123122392
tae-r.2
for
123112886
tae-r.2
for
123104614
hvu-r.1
for
123400170
ghi-r.1
for
107945797
ghi-r.1
for
121211306
bna-r.1
for
106366334
bna-r.1
for
106392246
sbi-r.1
for
8063321
sot-r.1
for
102598775
cit-r.1
for
102631297
bdi-r.1
for
100834750
bdi-r.1
for
100834447
nta-r.1
for
107787846
nta-r.1
for
107768348


Ortholog ID: 9196
Species cre ath gma gma sly osa zma zma bra vvi ppo mtr tae tae tae hvu ghi ghi bna bna sbi sot cit bdi bdi nta nta
Symbol CHLRE_08g368950v5 AT5G66120 LOC100812989 LOC100806628 DHQS LOC4347717 LOC100283288 LOC100272979 LOC103837671 LOC100266137 LOC18099163 LOC11420575 LOC123122392 LOC123112886 LOC123104614 LOC123400170 LOC107945797 LOC121211306 LOC106366334 LOC106392246 LOC8063321 LOC102598775 LOC102631297 LOC100834750 LOC100834447 LOC107787846 LOC107768348
Function* uncharacterized protein 3-dehydroquinate synthase 3-dehydroquinate synthase-like 3-dehydroquinate synthase dehydroquinate synthase 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase 3-dehydroquinate synthase 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase-like 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase, chloroplastic 3-dehydroquinate synthase, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04144 Endocytosis 7
cre03272 Virion - Hepatitis viruses 5
cre03250 Viral life cycle - HIV-1 4
cre04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 9
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
ath00030 Pentose phosphate pathway 4
ath01200 Carbon metabolism 3
ath00360 Phenylalanine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
gma01230 Biosynthesis of amino acids 9
gma00020 Citrate cycle (TCA cycle) 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
gma01230 Biosynthesis of amino acids 8
gma01200 Carbon metabolism 3
gma00010 Glycolysis / Gluconeogenesis 2
gma00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 10
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
sly01200 Carbon metabolism 5
sly00030 Pentose phosphate pathway 2
sly00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 9
osa01200 Carbon metabolism 6
osa00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
osa00710 Carbon fixation by Calvin cycle 4
osa00620 Pyruvate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 10
zma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
zma01200 Carbon metabolism 5
zma00350 Tyrosine metabolism 3
zma00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 11
zma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
zma01200 Carbon metabolism 5
zma00350 Tyrosine metabolism 4
zma00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 14
bra00400 Phenylalanine, tyrosine and tryptophan biosynthesis 11
bra00999 Biosynthesis of various plant secondary metabolites 3
bra00350 Tyrosine metabolism 2
bra00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
vvi01230 Biosynthesis of amino acids 7
vvi00020 Citrate cycle (TCA cycle) 3
vvi00350 Tyrosine metabolism 2
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 6
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
ppo01200 Carbon metabolism 2
ppo00071 Fatty acid degradation 2
ppo00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 8
mtr00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
mtr00350 Tyrosine metabolism 4
mtr01200 Carbon metabolism 4
mtr00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 11
tae01230 Biosynthesis of amino acids 11
tae00270 Cysteine and methionine metabolism 3
tae00350 Tyrosine metabolism 3
tae00360 Phenylalanine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 13
tae01230 Biosynthesis of amino acids 13
tae00999 Biosynthesis of various plant secondary metabolites 3
tae00790 Folate biosynthesis 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 12
tae01230 Biosynthesis of amino acids 12
tae00270 Cysteine and methionine metabolism 2
tae00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
hvu01230 Biosynthesis of amino acids 4
hvu00480 Glutathione metabolism 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
ghi01230 Biosynthesis of amino acids 8
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
ghi01230 Biosynthesis of amino acids 8
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 11
bna01230 Biosynthesis of amino acids 11
bna00010 Glycolysis / Gluconeogenesis 2
bna00071 Fatty acid degradation 2
bna00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 11
bna01230 Biosynthesis of amino acids 11
bna00010 Glycolysis / Gluconeogenesis 2
bna00071 Fatty acid degradation 2
bna00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00940 Phenylpropanoid biosynthesis 9
sbi00360 Phenylalanine metabolism 8
sbi01230 Biosynthesis of amino acids 8
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
sbi00670 One carbon pool by folate 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 9
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
sot01200 Carbon metabolism 4
sot00020 Citrate cycle (TCA cycle) 2
sot00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 3
cit00510 N-Glycan biosynthesis 2
cit00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 11
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
bdi01200 Carbon metabolism 5
bdi00030 Pentose phosphate pathway 4
bdi00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 12
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
bdi01200 Carbon metabolism 5
bdi00030 Pentose phosphate pathway 4
bdi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 6
nta00941 Flavonoid biosynthesis 6
nta00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 6
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
nta01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 6
nta00941 Flavonoid biosynthesis 6
nta00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 6
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
nta01230 Biosynthesis of amino acids 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5721715 836744 100812989 100806628 544273 4347717 100283288 100272979 103837671 100266137 18099163 11420575 123122392 123112886 123104614 123400170 107945797 121211306 106366334 106392246 8063321 102598775 102631297 100834750 100834447 107787846 107768348
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