ATTED-II : GeneCoexpression result

Species	Gene	Description
cre-r.1	CHLRE_06g260800v5	uncharacterized protein
ath-u.5	ARPC4	binding protein
gma-u.5	100778688	actin-related protein 2/3 complex subunit 4
gma-u.5	100527736	uncharacterized LOC100527736
sly-u.5	101260916	actin-related protein 2/3 complex subunit 4
osa-u.5	4334780	actin-related protein 2/3 complex subunit 4
zma-u.5	100286207	uncharacterized LOC100286207
bra-r.6	103863562	actin-related protein 2/3 complex subunit 4
vvi-u.5	100253856	actin-related protein 2/3 complex subunit 4
ppo-u.5	18107079	actin-related protein 2/3 complex subunit 4
mtr-u.5	11426571	actin-related protein 2/3 complex subunit 4
tae-r.2	123114322	actin-related protein 2/3 complex subunit 4
tae-r.2	123123807	actin-related protein 2/3 complex subunit 4
tae-r.2	123087612	actin-related protein 2/3 complex subunit 4
hvu-r.1	123395104	actin-related protein 2/3 complex subunit 4
ghi-r.1	107936055	actin-related protein 2/3 complex subunit 4
ghi-r.1	107934431	actin-related protein 2/3 complex subunit 4
bna-r.1	106445794	actin-related protein 2/3 complex subunit 4
bna-r.1	106391584	actin-related protein 2/3 complex subunit 4
sbi-r.1	8060877	actin-related protein 2/3 complex subunit 4
sot-r.1	102583856	actin-related protein 2/3 complex subunit 4
cit-r.1	102618750	actin-related protein 2/3 complex subunit 4
bdi-r.1	100823545	actin-related protein 2/3 complex subunit 4
nta-r.1	107786182	actin-related protein 2/3 complex subunit 4
nta-r.1	107811878	actin-related protein 2/3 complex subunit 4

Annotation

functional annotation

KEGG

cre04144 [list] [network] Endocytosis (52 genes)

cre04517 [list] [network] IgSF CAM signaling (14 genes)

cre05100 [list] [network] Bacterial invasion of epithelial cells (6 genes)

GO BP

GO:0034314 [list] [network] Arp2/3 complex-mediated actin nucleation	(6 genes)	IEA
GO:0030041 [list] [network] actin filament polymerization	(19 genes)	IEA

GO CC

GO:0005885 [list] [network] Arp2/3 protein complex	(6 genes)	IEA
GO:0015629 [list] [network] actin cytoskeleton	(42 genes)	IEA

GO MF

GO:0051015 [list] [network] actin filament binding

(18 genes)

IEA

Protein

XP_042923498.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, nucl 2, cyto 1, nucl_plas 1

(predict for XP_042923498.1)

Subcellular
localization
TargetP

other 3

(predict for XP_042923498.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_06g260800v5	ath-u.5 for ARPC4	gma-u.5 for 100778688	gma-u.5 for 100527736	sly-u.5 for 101260916	osa-u.5 for 4334780	zma-u.5 for 100286207	bra-r.6 for 103863562	vvi-u.5 for 100253856	ppo-u.5 for 18107079	mtr-u.5 for 11426571	tae-r.2 for 123114322	tae-r.2 for 123123807	tae-r.2 for 123087612	hvu-r.1 for 123395104	ghi-r.1 for 107936055	ghi-r.1 for 107934431	bna-r.1 for 106445794	bna-r.1 for 106391584	sbi-r.1 for 8060877	sot-r.1 for 102583856	cit-r.1 for 102618750	bdi-r.1 for 100823545	nta-r.1 for 107786182	nta-r.1 for 107811878

Ortholog

Ortholog ID: 10566

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

ARPC4

Function^*

uncharacterized protein

binding protein

actin-related protein 2/3 complex subunit 4

uncharacterized LOC100527736

actin-related protein 2/3 complex subunit 4

uncharacterized LOC100286207

actin-related protein 2/3 complex subunit 4

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	6
ath04517	IgSF CAM signaling	3
ath05100	Bacterial invasion of epithelial cells	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03410	Base excision repair	2
gma00510	N-Glycan biosynthesis	2
gma00513	Various types of N-glycan biosynthesis	2
gma04144	Endocytosis	2
gma04517	IgSF CAM signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	2
gma04517	IgSF CAM signaling	2
gma05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04130	SNARE interactions in vesicular transport	2
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	5
osa00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00020	Citrate cycle (TCA cycle)	2
vvi01200	Carbon metabolism	2
vvi01210	2-Oxocarboxylic acid metabolism	2
vvi01230	Biosynthesis of amino acids	2
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00400	Phenylalanine, tyrosine and tryptophan biosynthesis	4
ppo01230	Biosynthesis of amino acids	4
ppo04144	Endocytosis	3
ppo04517	IgSF CAM signaling	2
ppo05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00900	Terpenoid backbone biosynthesis	3
mtr00941	Flavonoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	4
tae00510	N-Glycan biosynthesis	2
tae00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	4
tae04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	3
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	2
ghi04517	IgSF CAM signaling	2
ghi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	2
ghi04517	IgSF CAM signaling	2
ghi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	6
bna04382	Cornified envelope formation	6
bna04144	Endocytosis	2
bna04517	IgSF CAM signaling	2
bna05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4
bna04382	Cornified envelope formation	4
bna03040	Spliceosome	2
bna04144	Endocytosis	2
bna04517	IgSF CAM signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	2
sot04517	IgSF CAM signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04142	Lysosome	3
bdi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	3
nta04517	IgSF CAM signaling	2
nta05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	2
nta04517	IgSF CAM signaling	2
nta05100	Bacterial invasion of epithelial cells	2

Expression

Expression pattern

Entrez Gene ID^*

5722039

3770404

100778688

100527736

101260916

4334780

100286207

103863562

100253856

18107079

11426571

123114322

123123807

123087612

123395104

107936055

107934431

106445794

106391584

8060877

102583856

102618750

100823545

107786182

107811878

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_06g260800v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_06g260800v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	2	1	1	1	1	1	1	1	3	1	2	2	1	1	1	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_06g260800v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_06g260800v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**