ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_12g520650v5	uncharacterized protein
ath-u.5	TLP2	tubby like protein 2
ath-u.5	TLP1	tubby like protein 1
ath-u.5	TLP7	tubby like protein 7
gma-u.5	100776328	uncharacterized LOC100776328
gma-u.5	100805380	tubby-like F-box protein 2
gma-u.5	100815464	tubby-like F-box protein 6
sly-u.5	101262472	tubby-like F-box protein 5
sly-u.5	101259367	tubby-like F-box protein 3
sly-u.5	101252229	tubby-like F-box protein 8
osa-u.5	4351582	tubby-like F-box protein 14
osa-u.5	4349867	tubby-like F-box protein 13
zma-u.5	100193930	uncharacterized LOC100193930
zma-u.5	100281288	uncharacterized LOC100281288
zma-u.5	100282475	tubby protein
bra-r.6	103835445	tubby-like F-box protein 10
bra-r.6	103849577	tubby-like F-box protein 1
bra-r.6	103845812	tubby-like F-box protein 11
vvi-u.5	100854941	tubby-like F-box protein 7
vvi-u.5	100261485	tubby-like F-box protein 5
vvi-u.5	100244335	tubby-like F-box protein 3
ppo-u.5	7468777	tubby-like F-box protein 8
ppo-u.5	7486584	tubby-like F-box protein 2
ppo-u.5	7469222	tubby-like F-box protein 8
mtr-u.5	11438329	tubby-like F-box protein 3
mtr-u.5	11434330	tubby-like F-box protein 8
mtr-u.5	11422435	tubby-like F-box protein 8
tae-r.2	123070594	tubby-like F-box protein 1
tae-r.2	123071539	tubby-like F-box protein 3
tae-r.2	123057533	tubby-like F-box protein 8
hvu-r.1	123447994	tubby-like F-box protein 13
hvu-r.1	123394922	tubby-like F-box protein 14
hvu-r.1	123402947	tubby-like F-box protein 5
ghi-r.1	107916328	tubby-like F-box protein 2
ghi-r.1	107914107	tubby-like F-box protein 8
ghi-r.1	107913644	tubby-like F-box protein 3
bna-r.1	106436154	tubby-like F-box protein 3
bna-r.1	106367685	tubby-like F-box protein 1
bna-r.1	106451599	tubby-like F-box protein 7
sbi-r.1	8063588	tubby-like F-box protein 10
sbi-r.1	8060975	tubby-like F-box protein 3
sbi-r.1	8061846	tubby-like F-box protein 1
sot-r.1	102602432	tubby-like F-box protein 8
sot-r.1	102596237	tubby-like F-box protein 8
sot-r.1	102589959	tubby-like F-box protein 6
cit-r.1	102624606	tubby-like F-box protein 7
cit-r.1	102607292	tubby-like F-box protein 5
cit-r.1	102613939	tubby-like F-box protein 8
bdi-r.1	100838863	tubby-like F-box protein 7
bdi-r.1	100836023	tubby-like F-box protein 8
bdi-r.1	100835634	tubby-like F-box protein 9
nta-r.1	107792621	tubby-like F-box protein 7
nta-r.1	107808997	tubby-like F-box protein 5
nta-r.1	107809196	tubby-like F-box protein 5

Top 50 coexpressed genes to CHLRE_12g520650v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_12g520650v5 (cre-r.1 coexpression data)

CoexMap"5722586"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_001697058.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, chlo 3, cyto 3

(predict for XP_001697058.1)

Subcellular
localization
TargetP

other 8

(predict for XP_001697058.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_12g520650v5	ath-u.5 for TLP2	ath-u.5 for TLP1	ath-u.5 for TLP7	gma-u.5 for 100776328	gma-u.5 for 100805380	gma-u.5 for 100815464	sly-u.5 for 101262472	sly-u.5 for 101259367	sly-u.5 for 101252229	osa-u.5 for 4351582	osa-u.5 for 4349867	zma-u.5 for 100193930	zma-u.5 for 100281288	zma-u.5 for 100282475	bra-r.6 for 103835445	bra-r.6 for 103849577	bra-r.6 for 103845812	vvi-u.5 for 100854941	vvi-u.5 for 100261485	vvi-u.5 for 100244335	ppo-u.5 for 7468777	ppo-u.5 for 7486584	ppo-u.5 for 7469222	mtr-u.5 for 11438329	mtr-u.5 for 11434330	mtr-u.5 for 11422435	tae-r.2 for 123070594	tae-r.2 for 123071539	tae-r.2 for 123057533	hvu-r.1 for 123447994	hvu-r.1 for 123394922	hvu-r.1 for 123402947	ghi-r.1 for 107916328	ghi-r.1 for 107914107	ghi-r.1 for 107913644	bna-r.1 for 106436154	bna-r.1 for 106367685	bna-r.1 for 106451599	sbi-r.1 for 8063588	sbi-r.1 for 8060975	sbi-r.1 for 8061846	sot-r.1 for 102602432	sot-r.1 for 102596237	sot-r.1 for 102589959	cit-r.1 for 102624606	cit-r.1 for 102607292	cit-r.1 for 102613939	bdi-r.1 for 100838863	bdi-r.1 for 100836023	bdi-r.1 for 100835634	nta-r.1 for 107792621	nta-r.1 for 107808997	nta-r.1 for 107809196

Ortholog

Ortholog ID: 109

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

CHLRE_12g520650v5

TLP7

TLP6

TLP9

Function^*

uncharacterized protein

tubby like protein 7

tubby like protein 6

tubby-like protein 9

tubby-like F-box protein 2

tubby-like F-box protein 8

tubby-like F-box protein 5

tubby-like F-box protein 3

tubby-like F-box protein 5

tubby-like F-box protein 6

tubby-like F-box protein 1

tubby-like F-box protein 6

tubby-like F-box protein 7

uncharacterized LOC100193930

tubby protein

uncharacterized LOC103630411

tubby-like F-box protein 6

tubby-like F-box protein 7

tubby-like F-box protein 10

tubby-like F-box protein 5

tubby-like F-box protein 3

tubby-like F-box protein 5

tubby-like F-box protein 8

tubby-like F-box protein 2

tubby-like F-box protein 7

tubby-like F-box protein 13

tubby-like F-box protein 5

tubby-like F-box protein 12

tubby-like F-box protein 11

tubby-like F-box protein 12

tubby-like F-box protein 3

tubby-like F-box protein 2

tubby-like F-box protein 3

tubby-like F-box protein 10

tubby-like F-box protein 6

tubby-like F-box protein 10

tubby-like F-box protein 13

tubby-like F-box protein 8

tubby-like F-box protein 9

tubby-like F-box protein 6

tubby-like F-box protein 8

tubby-like F-box protein 3

tubby-like F-box protein 7

tubby-like F-box protein 3

tubby-like F-box protein 8

tubby-like F-box protein 9

tubby-like F-box protein 3

tubby-like F-box protein 13

tubby-like F-box protein 8

tubby-like F-box protein 14

tubby-like F-box protein 5

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04144	Endocytosis	3
cre04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	2
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00562	Inositol phosphate metabolism	2
sly04070	Phosphatidylinositol signaling system	2
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	2
sly04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	3
osa04016	MAPK signaling pathway - plant	2
osa04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	5
zma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	3
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03250	Viral life cycle - HIV-1	2
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04016	MAPK signaling pathway - plant	2
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00541	Biosynthesis of various nucleotide sugars	3
vvi01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	3
vvi04016	MAPK signaling pathway - plant	2
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	3
ppo00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04136	Autophagy - other	3
hvu00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00350	Tyrosine metabolism	2
ghi00280	Valine, leucine and isoleucine degradation	2
ghi00640	Propanoate metabolism	2
ghi00785	Lipoic acid metabolism	2
ghi01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00270	Cysteine and methionine metabolism	2
ghi04148	Efferocytosis	2
ghi00061	Fatty acid biosynthesis	2
ghi00620	Pyruvate metabolism	2
ghi00640	Propanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00052	Galactose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	3
sbi04144	Endocytosis	3
sbi04626	Plant-pathogen interaction	2
sbi03250	Viral life cycle - HIV-1	2
sbi03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	2
sot03015	mRNA surveillance pathway	2
sot04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	3
cit04141	Protein processing in endoplasmic reticulum	2
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01240	Biosynthesis of cofactors	2
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	8
nta03272	Virion - Hepatitis viruses	2

Expression

Expression pattern

Entrez Gene ID^*

5722586

841766

841130

819812

100805380

100799499

100794899

101259367

101250396

101265673

4325911

4332845

4337480

100193930

100282475

103630411

103847942

103849510

103840554

100261485

100244335

100258055

7471947

7477619

7495478

11434330

11411335

11408400

123086598

123145219

123162143

123424817

123412510

123444802

107888922

107897628

107923992

106424621

106371857

106361872

8070670

8071183

8082966

102589959

102587653

102583347

102624606

102614302

102617444

100835634

100825898

100844621

107812383

107799325

107769876

The preparation time of this page was 0.1 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	3	3	3	2	3	3	3	3	3	3	3	3	3	3	3	3	3	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_12g520650v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_12g520650v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**