ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	100282475	tubby protein
zma-r.6	100282475	tubby protein
zma-m.5	100282475	tubby protein
zma-u.5	100281288	uncharacterized LOC100281288
zma-u.5	100284076	uncharacterized LOC100284076
zma-u.5	100281492	uncharacterized LOC100281492
sbi-r.1	8060975	tubby-like F-box protein 3
sbi-r.1	8063588	tubby-like F-box protein 10
sbi-r.1	8070670	tubby-like F-box protein 13
osa-u.5	4325075	tubby-like F-box protein 3
osa-u.5	4325911	tubby-like F-box protein 1
osa-u.5	4351582	tubby-like F-box protein 14
tae-r.2	123086598	tubby-like F-box protein 13
tae-r.2	123085865	tubby-like F-box protein 6
tae-r.2	123079000	tubby-like F-box protein 1
hvu-r.1	123412510	tubby-like F-box protein 12
hvu-r.1	123447994	tubby-like F-box protein 13
hvu-r.1	123446653	tubby-like F-box protein 8
bdi-r.1	100836023	tubby-like F-box protein 8
bdi-r.1	100835634	tubby-like F-box protein 9
bdi-r.1	100835281	tubby-like F-box protein 14
ath-u.5	TLP2	tubby like protein 2
ath-u.5	TLP1	tubby like protein 1
ath-u.5	TLP7	tubby like protein 7
gma-u.5	100796250	tubby-like F-box protein 5
gma-u.5	100794899	tubby-like F-box protein 5
gma-u.5	100794141	tubby-like F-box protein 3
sly-u.5	101248434	tubby-like F-box protein 8
sly-u.5	101265673	tubby-like F-box protein 6
sly-u.5	101262472	tubby-like F-box protein 5
bra-r.6	103843899	tubby-like F-box protein 6
bra-r.6	103849577	tubby-like F-box protein 1
bra-r.6	103845812	tubby-like F-box protein 11
vvi-u.5	100261485	tubby-like F-box protein 5
vvi-u.5	100258055	tubby-like F-box protein 3
vvi-u.5	100253937	tubby-like F-box protein 5
ppo-u.5	7495478	tubby-like F-box protein 5
ppo-u.5	7469221	tubby-like F-box protein 8
ppo-u.5	7486584	tubby-like F-box protein 2
mtr-u.5	11411335	tubby-like F-box protein 2
mtr-u.5	11422435	tubby-like F-box protein 8
mtr-u.5	11434330	tubby-like F-box protein 8
ghi-r.1	107909177	tubby-like F-box protein 7
ghi-r.1	107910944	tubby-like F-box protein 3
ghi-r.1	107912012	tubby-like F-box protein 5
bna-r.1	106436154	tubby-like F-box protein 3
bna-r.1	106451599	tubby-like F-box protein 7
bna-r.1	106367685	tubby-like F-box protein 1
sot-r.1	102602432	tubby-like F-box protein 8
sot-r.1	102596237	tubby-like F-box protein 8
sot-r.1	102589959	tubby-like F-box protein 6
cit-r.1	102617444	tubby-like F-box protein 8
cit-r.1	102607292	tubby-like F-box protein 5
cit-r.1	102613939	tubby-like F-box protein 8
nta-r.1	107788144	tubby-like F-box protein 3
nta-r.1	107809196	tubby-like F-box protein 5
nta-r.1	107812383	tubby-like F-box protein 8
cre-r.1	CHLRE_12g520650v5	uncharacterized protein

Top 50 coexpressed genes to 100282475 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100282475 (zma-u.5 coexpression data)

CoexMap"100282475"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

NP_001148856.2 [sequence] [blastp]
NP_001399067.1 [sequence] [blastp]
NP_001399068.1 [sequence] [blastp]
XP_035822993.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto_nucl 4, cyto 2, chlo 2	(predict for NP_001148856.2)
nucl 4, cyto_nucl 4, cyto 2, chlo 2	(predict for NP_001399067.1)
nucl 4, cyto_nucl 4, cyto 2, chlo 2	(predict for NP_001399068.1)
nucl 4, cyto_nucl 4, cyto 2, chlo 2	(predict for XP_035822993.1)

Subcellular
localization
TargetP

chlo 5	(predict for NP_001148856.2)
chlo 5	(predict for NP_001399067.1)
chlo 5	(predict for NP_001399068.1)
chlo 5	(predict for XP_035822993.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100282475	zma-r.6 for 100282475	zma-m.5 for 100282475	zma-u.5 for 100281288	zma-u.5 for 100284076	zma-u.5 for 100281492	sbi-r.1 for 8060975	sbi-r.1 for 8063588	sbi-r.1 for 8070670	osa-u.5 for 4325075	osa-u.5 for 4325911	osa-u.5 for 4351582	tae-r.2 for 123086598	tae-r.2 for 123085865	tae-r.2 for 123079000	hvu-r.1 for 123412510	hvu-r.1 for 123447994	hvu-r.1 for 123446653	bdi-r.1 for 100836023	bdi-r.1 for 100835634	bdi-r.1 for 100835281	ath-u.5 for TLP2	ath-u.5 for TLP1	ath-u.5 for TLP7	gma-u.5 for 100796250	gma-u.5 for 100794899	gma-u.5 for 100794141	sly-u.5 for 101248434	sly-u.5 for 101265673	sly-u.5 for 101262472	bra-r.6 for 103843899	bra-r.6 for 103849577	bra-r.6 for 103845812	vvi-u.5 for 100261485	vvi-u.5 for 100258055	vvi-u.5 for 100253937	ppo-u.5 for 7495478	ppo-u.5 for 7469221	ppo-u.5 for 7486584	mtr-u.5 for 11411335	mtr-u.5 for 11422435	mtr-u.5 for 11434330	ghi-r.1 for 107909177	ghi-r.1 for 107910944	ghi-r.1 for 107912012	bna-r.1 for 106436154	bna-r.1 for 106451599	bna-r.1 for 106367685	sot-r.1 for 102602432	sot-r.1 for 102596237	sot-r.1 for 102589959	cit-r.1 for 102617444	cit-r.1 for 102607292	cit-r.1 for 102613939	nta-r.1 for 107788144	nta-r.1 for 107809196	nta-r.1 for 107812383	cre-r.1 for CHLRE_12g520650v5

Ortholog

Ortholog ID: 109

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

TLP7

TLP6

TLP9

Function^*

tubby protein

uncharacterized LOC103630411

uncharacterized LOC100193930

tubby-like F-box protein 13

tubby-like F-box protein 8

tubby-like F-box protein 9

tubby-like F-box protein 1

tubby-like F-box protein 7

tubby-like F-box protein 6

tubby-like F-box protein 13

tubby-like F-box protein 12

tubby-like F-box protein 5

tubby-like F-box protein 12

tubby-like F-box protein 3

tubby-like F-box protein 11

tubby-like F-box protein 9

tubby-like F-box protein 3

tubby-like F-box protein 13

tubby like protein 7

tubby like protein 6

tubby-like protein 9

tubby-like F-box protein 5

tubby-like F-box protein 8

tubby-like F-box protein 2

tubby-like F-box protein 6

tubby-like F-box protein 3

tubby-like F-box protein 5

tubby-like F-box protein 7

tubby-like F-box protein 6

tubby-like F-box protein 10

tubby-like F-box protein 5

tubby-like F-box protein 3

tubby-like F-box protein 5

tubby-like F-box protein 2

tubby-like F-box protein 8

tubby-like F-box protein 7

tubby-like F-box protein 3

tubby-like F-box protein 2

tubby-like F-box protein 3

tubby-like F-box protein 10

tubby-like F-box protein 6

tubby-like F-box protein 10

tubby-like F-box protein 6

tubby-like F-box protein 8

tubby-like F-box protein 3

tubby-like F-box protein 8

tubby-like F-box protein 3

tubby-like F-box protein 7

tubby-like F-box protein 8

tubby-like F-box protein 14

tubby-like F-box protein 5

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	5
zma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00052	Galactose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	3
sbi04144	Endocytosis	3
sbi04626	Plant-pathogen interaction	2
sbi03250	Viral life cycle - HIV-1	2
sbi03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	3
osa04016	MAPK signaling pathway - plant	2
osa04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04136	Autophagy - other	3
hvu00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	2
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00562	Inositol phosphate metabolism	2
sly04070	Phosphatidylinositol signaling system	2
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	2
sly04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03250	Viral life cycle - HIV-1	2
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	3
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04016	MAPK signaling pathway - plant	2
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00541	Biosynthesis of various nucleotide sugars	3
vvi01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	3
vvi04016	MAPK signaling pathway - plant	2
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	3
ppo00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00350	Tyrosine metabolism	2
ghi00280	Valine, leucine and isoleucine degradation	2
ghi00640	Propanoate metabolism	2
ghi00785	Lipoic acid metabolism	2
ghi01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00270	Cysteine and methionine metabolism	2
ghi04148	Efferocytosis	2
ghi00061	Fatty acid biosynthesis	2
ghi00620	Pyruvate metabolism	2
ghi00640	Propanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	2
sot03015	mRNA surveillance pathway	2
sot04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01240	Biosynthesis of cofactors	2
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	3
cit04141	Protein processing in endoplasmic reticulum	2
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	8
nta03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04144	Endocytosis	3
cre04130	SNARE interactions in vesicular transport	2

Expression

Expression pattern

Entrez Gene ID^*

100282475

103630411

100193930

8070670

8071183

8082966

4325911

4337480

4332845

123086598

123162143

123145219

123412510

123444802

123424817

100835634

100825898

100844621

841766

841130

819812

100794899

100799499

100805380

101265673

101259367

101250396

103849510

103847942

103840554

100261485

100258055

100244335

7495478

7477619

7471947

11411335

11434330

11408400

107888922

107897628

107923992

106424621

106371857

106361872

102589959

102587653

102583347

102617444

102614302

102624606

107812383

107799325

107769876

5722586

The preparation time of this page was 0.2 [sec].


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	6	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100282475 (zma-u.5 coexpression data)

Top 50 enrichment test to 100282475 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**