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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_17g726100v5   uncharacterized protein 
 ath-u.5   AT1G22660   Polynucleotide adenylyltransferase family protein 
 gma-u.5   100792514   tRNA nucleotidyltransferase cca2 
 gma-u.5   100527248   polynucleotide adenylyltransferase family protein 
 sly-u.5   101245020   tRNA nucleotidyltransferase cca2-like 
 sly-u.5   101243854   tRNA nucleotidyltransferase cca2 
 osa-u.5   4351629   tRNA nucleotidyltransferase cca2 
 zma-u.5   103640843   putative CCA tRNA nucleotidyltransferase 2 
 bra-r.6   103840838   tRNA nucleotidyltransferase cca2 
 bra-r.6   103829316   CCA tRNA nucleotidyltransferase, mitochondrial 
 vvi-u.5   100257606   tRNA nucleotidyltransferase cca2 
 ppo-u.5   18104442   tRNA nucleotidyltransferase cca2 
 mtr-u.5   25484987   tRNA nucleotidyltransferase cca2 
 mtr-u.5   25484991   tRNA nucleotidyltransferase cca2 
 tae-r.2   123102929   CCA tRNA nucleotidyltransferase, mitochondrial 
 tae-r.2   123111091   tRNA nucleotidyltransferase cca2-like 
 hvu-r.1   123396517   tRNA nucleotidyltransferase cca2 
 ghi-r.1   107914040   tRNA nucleotidyltransferase cca2 
 ghi-r.1   107959536   tRNA nucleotidyltransferase cca2 
 bna-r.1   106429808   tRNA nucleotidyltransferase cca2 
 bna-r.1   106402249   tRNA nucleotidyltransferase cca2 
 bna-r.1   106411090   CCA tRNA nucleotidyltransferase, mitochondrial 
 sbi-r.1   110429780   putative CCA tRNA nucleotidyltransferase 2 
 sot-r.1   102601333   putative CCA tRNA nucleotidyltransferase 2 
 cit-r.1   102621272   tRNA nucleotidyltransferase cca2 
 bdi-r.1   100823932   putative CCA tRNA nucleotidyltransferase 2 
 nta-r.1   107803792   tRNA nucleotidyltransferase cca2 
 nta-r.1   107784829   tRNA nucleotidyltransferase cca2 

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Top 50 coexpressed genes to CHLRE_17g726100v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_17g726100v5 (cre-r.1 coexpression data)

CoexMap"5722784"


creCHLRE_17g726100v5 | Entrez gene ID : 5722784      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 2 1 1 2 1 1 2 2 1 2 3 1 1 1 1 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0001680 [list] [network] tRNA 3'-terminal CCA addition  (2 genes)  IEA  
GO CC
GO MF
GO:0052929 [list] [network] ATP:3'-cytidine-cytidine-tRNA adenylyltransferase activity  (2 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_001697252.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 1  (predict for XP_001697252.2)
Subcellular
localization
TargetP
mito 5,  chlo 4  (predict for XP_001697252.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_17g726100v5
ath-u.5
for
AT1G22660
gma-u.5
for
100792514
gma-u.5
for
100527248
sly-u.5
for
101245020
sly-u.5
for
101243854
osa-u.5
for
4351629
zma-u.5
for
103640843
bra-r.6
for
103840838
bra-r.6
for
103829316
vvi-u.5
for
100257606
ppo-u.5
for
18104442
mtr-u.5
for
25484987
mtr-u.5
for
25484991
tae-r.2
for
123102929
tae-r.2
for
123111091
hvu-r.1
for
123396517
ghi-r.1
for
107914040
ghi-r.1
for
107959536
bna-r.1
for
106429808
bna-r.1
for
106402249
bna-r.1
for
106411090
sbi-r.1
for
110429780
sot-r.1
for
102601333
cit-r.1
for
102621272
bdi-r.1
for
100823932
nta-r.1
for
107803792
nta-r.1
for
107784829


Ortholog ID: 6710
Species cre ath gma gma sly sly osa zma bra bra vvi ppo mtr mtr hvu ghi ghi bna bna bna sbi sot cit bdi nta nta
Symbol CHLRE_17g726100v5 AT1G22660 LOC100792514 LOC100527248 LOC101245020 LOC101243854 LOC4351629 LOC103640843 LOC103840838 LOC103829316 LOC100257606 LOC18104442 LOC25484987 LOC25484991 LOC123396517 LOC107914040 LOC107959536 LOC106429808 LOC106402249 LOC106411090 LOC110429780 LOC102601333 LOC102621272 LOC100823932 LOC107803792 LOC107784829
Function* uncharacterized protein Polynucleotide adenylyltransferase family protein tRNA nucleotidyltransferase cca2 polynucleotide adenylyltransferase family protein tRNA nucleotidyltransferase cca2-like tRNA nucleotidyltransferase cca2 tRNA nucleotidyltransferase cca2 putative CCA tRNA nucleotidyltransferase 2 tRNA nucleotidyltransferase cca2 CCA tRNA nucleotidyltransferase, mitochondrial tRNA nucleotidyltransferase cca2 tRNA nucleotidyltransferase cca2 tRNA nucleotidyltransferase cca2 tRNA nucleotidyltransferase cca2 tRNA nucleotidyltransferase cca2 tRNA nucleotidyltransferase cca2 tRNA nucleotidyltransferase cca2 tRNA nucleotidyltransferase cca2 tRNA nucleotidyltransferase cca2 CCA tRNA nucleotidyltransferase, mitochondrial putative CCA tRNA nucleotidyltransferase 2 putative CCA tRNA nucleotidyltransferase 2 tRNA nucleotidyltransferase cca2 putative CCA tRNA nucleotidyltransferase 2 tRNA nucleotidyltransferase cca2 tRNA nucleotidyltransferase cca2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03018 RNA degradation 2
ath00970 Aminoacyl-tRNA biosynthesis 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma00760 Nicotinate and nicotinamide metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 3
zma00970 Aminoacyl-tRNA biosynthesis 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01230 Biosynthesis of amino acids 2
vvi03018 RNA degradation 2
vvi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 3
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03013 Nucleocytoplasmic transport 2
ghi03250 Viral life cycle - HIV-1 2
ghi03440 Homologous recombination 2
ghi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 8
ghi03008 Ribosome biogenesis in eukaryotes 6
ghi03250 Viral life cycle - HIV-1 6
ghi03440 Homologous recombination 2
ghi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5722784 838872 100792514 100527248 101245020 101243854 4351629 103640843 103840838 103829316 100257606 18104442 25484987 25484991 123396517 107914040 107959536 106429808 106402249 106411090 110429780 102601333 102621272 100823932 107803792 107784829
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