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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g152950v5   uncharacterized protein 
 cre-r.1   CHLRE_16g691900v5   uncharacterized protein 
 ath-u.5   AT2G30320   Pseudouridine synthase family protein 
 gma-u.5   100791132   putative tRNA pseudouridine synthase 
 gma-u.5   100776655   putative tRNA pseudouridine synthase 
 gma-u.5   100776123   putative tRNA pseudouridine synthase 
 sly-u.5   109119442   putative tRNA pseudouridine synthase 
 sly-u.5   101259073   putative tRNA pseudouridine synthase 
 osa-u.5   4332779   putative tRNA pseudouridine synthase 
 zma-u.5   100193430   Putative tRNA pseudouridine synthase 
 bra-r.6   103857306   putative tRNA pseudouridine synthase 
 vvi-u.5   100241658   putative tRNA pseudouridine synthase 
 ppo-u.5   7497427   putative tRNA pseudouridine synthase 
 mtr-u.5   11410109   putative tRNA pseudouridine synthase 
 mtr-u.5   11416983   putative tRNA pseudouridine synthase 
 tae-r.2   123097529   putative tRNA pseudouridine synthase 
 tae-r.2   123085811   putative tRNA pseudouridine synthase 
 hvu-r.1   123448681   putative tRNA pseudouridine synthase 
 ghi-r.1   107935045   putative tRNA pseudouridine synthase 
 ghi-r.1   107927029   putative tRNA pseudouridine synthase 
 bna-r.1   106387879   putative tRNA pseudouridine synthase 
 bna-r.1   106437596   putative tRNA pseudouridine synthase 
 sbi-r.1   8083658   putative tRNA pseudouridine synthase 
 sot-r.1   102594663   putative tRNA pseudouridine synthase 
 cit-r.1   102625111   putative tRNA pseudouridine synthase 
 bdi-r.1   100837227   putative tRNA pseudouridine synthase 
 nta-r.1   107810419   putative tRNA pseudouridine synthase 
 nta-r.1   142166197   putative tRNA pseudouridine synthase 

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Top 50 coexpressed genes to CHLRE_03g152950v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g152950v5 (cre-r.1 coexpression data)

CoexMap"5723113"


creCHLRE_03g152950v5 | Entrez gene ID : 5723113    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 2 1 3 2 1 1 1 1 1 2 2 1 2 2 1 1 1 1 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031119 [list] [network] tRNA pseudouridine synthesis  (8 genes)  IEA  
GO:1990481 [list] [network] mRNA pseudouridine synthesis  (8 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (23 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_042925673.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 4  (predict for XP_042925673.1)
Subcellular
localization
TargetP
other 8  (predict for XP_042925673.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g152950v5
cre-r.1
for
CHLRE_16g691900v5
ath-u.5
for
AT2G30320
gma-u.5
for
100791132
gma-u.5
for
100776655
gma-u.5
for
100776123
sly-u.5
for
109119442
sly-u.5
for
101259073
osa-u.5
for
4332779
zma-u.5
for
100193430
bra-r.6
for
103857306
vvi-u.5
for
100241658
ppo-u.5
for
7497427
mtr-u.5
for
11410109
mtr-u.5
for
11416983
tae-r.2
for
123097529
tae-r.2
for
123085811
hvu-r.1
for
123448681
ghi-r.1
for
107935045
ghi-r.1
for
107927029
bna-r.1
for
106387879
bna-r.1
for
106437596
sbi-r.1
for
8083658
sot-r.1
for
102594663
cit-r.1
for
102625111
bdi-r.1
for
100837227
nta-r.1
for
107810419
nta-r.1
for
142166197


Ortholog ID: 8407
Species cre cre ath gma gma gma sly sly osa zma bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol CHLRE_03g152950v5 CHLRE_16g691900v5 AT2G30320 LOC100791132 LOC100776655 LOC100776123 LOC109119442 LOC101259073 LOC4332779 LOC100193430 LOC103857306 LOC100241658 LOC7497427 LOC11410109 LOC11416983 LOC123097529 LOC123085811 LOC123448681 LOC107935045 LOC107927029 LOC106387879 LOC106437596 LOC8083658 LOC102594663 LOC102625111 LOC100837227 LOC107810419 LOC142166197
Function* uncharacterized protein uncharacterized protein Pseudouridine synthase family protein putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase Putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase putative tRNA pseudouridine synthase
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 3
cre01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01240 Biosynthesis of cofactors 2
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00240 Pyrimidine metabolism 3
mtr01240 Biosynthesis of cofactors 3
mtr01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00020 Citrate cycle (TCA cycle) 4
tae00620 Pyruvate metabolism 4
tae01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00020 Citrate cycle (TCA cycle) 2
tae00620 Pyruvate metabolism 2
tae01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
ghi04626 Plant-pathogen interaction 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
nta04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
nta04146 Peroxisome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5723113 66056819 817582 100791132 100776655 100776123 109119442 101259073 4332779 100193430 103857306 100241658 7497427 11410109 11416983 123097529 123085811 123448681 107935045 107927029 106387879 106437596 8083658 102594663 102625111 100837227 107810419 142166197
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