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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1  CHLRE_16g649400v5  uncharacterized protein 
 ath-u.5  AT1G54310  S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 gma-u.5  100796633  ribosomal RNA large subunit methyltransferase I 
 osa-u.5  4328457  uncharacterized LOC4328457 
 zma-u.5  100382848  uncharacterized LOC100382848 
 bra-r.6  103869113  ribosomal RNA large subunit methyltransferase I 
 vvi-u.5  100262230  uncharacterized LOC100262230 
 ppo-u.5  7481605  uncharacterized LOC7481605 
 mtr-u.5  120577709  ribosomal RNA large subunit methyltransferase I 
 tae-r.2  123144135  ribosomal RNA large subunit methyltransferase I 
 tae-r.2  123136625  ribosomal RNA large subunit methyltransferase I 
 tae-r.2  123132550  ribosomal RNA large subunit methyltransferase I 
 hvu-r.1  123400982  ribosomal RNA large subunit methyltransferase I 
 ghi-r.1  107953614  ribosomal RNA large subunit methyltransferase I 
 ghi-r.1  107913196  ribosomal RNA large subunit methyltransferase I 
 bna-r.1  106427503  ribosomal RNA large subunit methyltransferase I-like 
 bna-r.1  111200986  ribosomal RNA large subunit methyltransferase I-like 
 bna-r.1  106391517  ribosomal RNA large subunit methyltransferase I 
 sbi-r.1  8077190  ribosomal RNA large subunit methyltransferase I 
 sot-r.1  102602589  ribosomal RNA large subunit methyltransferase I 
 cit-r.1  102626476  uncharacterized LOC102626476 
 bdi-r.1  100830113  ribosomal RNA large subunit methyltransferase I 
 nta-r.1  107788632  uncharacterized LOC107788632 
 nta-r.1  107760018  uncharacterized LOC107760018 

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Top 50 coexpressed genes to CHLRE_16g649400v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_16g649400v5 (cre-r.1 coexpression data)

CoexMap"5723733"


creCHLRE_16g649400v5 | Entrez gene ID : 5723733
Species cre ath gma osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta sly
Paralog 1 1 1 1 1 1 1 1 1 3 1 2 3 1 1 1 1 2 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_001698257.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  cyto 1,  mito 1  (predict for XP_001698257.2)
Subcellular
localization
TargetP
mito 7  (predict for XP_001698257.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Reference

cre-r.1
for
CHLRE_16g649400v5


ath-u.5
for
AT1G54310


gma-u.5
for
100796633


osa-u.5
for
4328457


zma-u.5
for
100382848


bra-r.6
for
103869113


vvi-u.5
for
100262230


ppo-u.5
for
7481605


mtr-u.5
for
120577709


tae-r.2
for
123144135


tae-r.2
for
123136625


tae-r.2
for
123132550


hvu-r.1
for
123400982


ghi-r.1
for
107953614


ghi-r.1
for
107913196


bna-r.1
for
106427503


bna-r.1
for
111200986


bna-r.1
for
106391517


sbi-r.1
for
8077190


sot-r.1
for
102602589


cit-r.1
for
102626476


bdi-r.1
for
100830113


nta-r.1
for
107788632


nta-r.1
for
107760018



Ortholog ID: 11090
Species cre ath gma osa zma bra vvi ppo mtr tae tae tae hvu ghi ghi bna bna bna sbi sot cit bdi nta nta
Symbol CHLRE_16g649400v5 AT1G54310 LOC100796633 LOC4328457 LOC100382848 LOC103869113 LOC100262230 LOC7481605 LOC120577709 LOC123144135 LOC123136625 LOC123132550 LOC123400982 LOC107953614 LOC107913196 LOC106427503 LOC111200986 LOC106391517 LOC8077190 LOC102602589 LOC102626476 LOC100830113 LOC107788632 LOC107760018
Function* uncharacterized protein S-adenosyl-L-methionine-dependent methyltransferases superfamily protein ribosomal RNA large subunit methyltransferase I uncharacterized LOC4328457 uncharacterized LOC100382848 ribosomal RNA large subunit methyltransferase I uncharacterized LOC100262230 uncharacterized LOC7481605 ribosomal RNA large subunit methyltransferase I ribosomal RNA large subunit methyltransferase I ribosomal RNA large subunit methyltransferase I ribosomal RNA large subunit methyltransferase I ribosomal RNA large subunit methyltransferase I ribosomal RNA large subunit methyltransferase I ribosomal RNA large subunit methyltransferase I ribosomal RNA large subunit methyltransferase I-like ribosomal RNA large subunit methyltransferase I-like ribosomal RNA large subunit methyltransferase I ribosomal RNA large subunit methyltransferase I ribosomal RNA large subunit methyltransferase I uncharacterized LOC102626476 ribosomal RNA large subunit methyltransferase I uncharacterized LOC107788632 uncharacterized LOC107760018
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00240 Pyrimidine metabolism 2
cre01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03060 Protein export 3
ppo00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00290 Valine, leucine and isoleucine biosynthesis 6
bna00770 Pantothenate and CoA biosynthesis 6
bna01210 2-Oxocarboxylic acid metabolism 6
bna01230 Biosynthesis of amino acids 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
sbi00330 Arginine and proline metabolism 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta00230 Purine metabolism 2
nta01232 Nucleotide metabolism 2
nta04820 Cytoskeleton in muscle cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5723733 841872 100796633 4328457 100382848 103869113 100262230 7481605 120577709 123144135 123136625 123132550 123400982 107953614 107913196 106427503 111200986 106391517 8077190 102602589 102626476 100830113 107788632 107760018
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