ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_17g738250v5	uncharacterized protein
ath-u.5	cPT4	Undecaprenyl pyrophosphate synthetase family protein
ath-u.5	AT5G58784	Undecaprenyl pyrophosphate synthetase family protein
gma-u.5	100801810	dehydrodolichyl diphosphate synthase 2
gma-u.5	100789922	dehydrodolichyl diphosphate synthase 2
gma-u.5	100815256	dehydrodolichyl diphosphate synthase 2
sly-u.5	CPT7	dehydrodolichyl diphosphate synthase 2
sly-u.5	101249721	dehydrodolichyl diphosphate synthase CPT5, chloroplastic
sly-u.5	CPT4	cis-prenyltransferase 4
osa-u.5	4324755	cis-prenyltransferase 4, chloroplastic
zma-u.5	100283522	undecaprenyl pyrophosphate synthetase
zma-u.5	100284572	undecaprenyl pyrophosphate synthetase
zma-u.5	100285459	undecaprenyl pyrophosphate synthetase
vvi-u.5	100244987	cis-prenyltransferase 4, chloroplastic
ppo-u.5	7468564	dehydrodolichyl diphosphate synthase 2
mtr-u.5	11410618	dehydrodolichyl diphosphate synthase 2
tae-r.2	123058803	cis-prenyltransferase 4, chloroplastic
tae-r.2	123065951	cis-prenyltransferase 4, chloroplastic
hvu-r.1	123447616	cis-prenyltransferase 4, chloroplastic-like
hvu-r.1	123444854	cis-prenyltransferase 4, chloroplastic-like
ghi-r.1	107891622	dehydrodolichyl diphosphate synthase 2
ghi-r.1	121220854	dehydrodolichyl diphosphate synthase 2
ghi-r.1	107889771	cis-prenyltransferase 4, chloroplastic
bna-r.1	106387370	dehydrodolichyl diphosphate synthase 2-like
bna-r.1	106420530	dehydrodolichyl diphosphate synthase 2-like
bna-r.1	111212069	dehydrodolichyl diphosphate synthase 5-like
sbi-r.1	8058935	isoprenyl transferase
sbi-r.1	8061664	isoprenyl transferase 2
sot-r.1	102581136	dehydrodolichyl diphosphate synthase 2-like
sot-r.1	102581469	dehydrodolichyl diphosphate synthase 2-like
cit-r.1	102628547	cis-prenyltransferase 4, chloroplastic-like
bdi-r.1	100830201	isoprenyl transferase
nta-r.1	107810503	cis-prenyltransferase 4, chloroplastic
nta-r.1	107805010	cis-prenyltransferase 4, chloroplastic-like
nta-r.1	107773583	dehydrodolichyl diphosphate synthase 2

Top 50 coexpressed genes to CHLRE_17g738250v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_17g738250v5 (cre-r.1 coexpression data)

CoexMap"5725180"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0016094 [list] [network] polyprenol biosynthetic process

(2 genes)

IEA

GO CC

GO:0005783 [list] [network] endoplasmic reticulum

(454 genes)

IEA

GO MF

Protein

XP_042915053.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 7, mito 1, nucl 1, extr 1, cyto_mito 1, mito_plas 1

(predict for XP_042915053.1)

Subcellular
localization
TargetP

chlo 7, mito 6

(predict for XP_042915053.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_17g738250v5	ath-u.5 for cPT4	ath-u.5 for AT5G58784	gma-u.5 for 100801810	gma-u.5 for 100789922	gma-u.5 for 100815256	sly-u.5 for CPT7	sly-u.5 for 101249721	sly-u.5 for CPT4	osa-u.5 for 4324755	zma-u.5 for 100283522	zma-u.5 for 100284572	zma-u.5 for 100285459	vvi-u.5 for 100244987	ppo-u.5 for 7468564	mtr-u.5 for 11410618	tae-r.2 for 123058803	tae-r.2 for 123065951	hvu-r.1 for 123447616	hvu-r.1 for 123444854	ghi-r.1 for 107891622	ghi-r.1 for 121220854	ghi-r.1 for 107889771	bna-r.1 for 106387370	bna-r.1 for 106420530	bna-r.1 for 111212069	sbi-r.1 for 8058935	sbi-r.1 for 8061664	sot-r.1 for 102581136	sot-r.1 for 102581469	cit-r.1 for 102628547	bdi-r.1 for 100830201	nta-r.1 for 107810503	nta-r.1 for 107805010	nta-r.1 for 107773583

Ortholog

Ortholog ID: 1680

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

cPT4

CPT7

CPT4

Function^*

uncharacterized protein

Undecaprenyl pyrophosphate synthetase family protein

dehydrodolichyl diphosphate synthase 2

dehydrodolichyl diphosphate synthase CPT5, chloroplastic

cis-prenyltransferase 4

cis-prenyltransferase 4, chloroplastic

undecaprenyl pyrophosphate synthetase

dehydrodolichyl diphosphate synthase 2

cis-prenyltransferase 4, chloroplastic

dehydrodolichyl diphosphate synthase 2

cis-prenyltransferase 4, chloroplastic-like

dehydrodolichyl diphosphate synthase 2

cis-prenyltransferase 4, chloroplastic

dehydrodolichyl diphosphate synthase 5-like

isoprenyl transferase

isoprenyl transferase 2

dehydrodolichyl diphosphate synthase 2-like

dimethylallylcistransferase, chloroplastic-like

cis-prenyltransferase 4, chloroplastic-like

isoprenyl transferase

cis-prenyltransferase 4, chloroplastic-like

dehydrodolichyl diphosphate synthase 2

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00900	Terpenoid backbone biosynthesis	3
ath04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04146	Peroxisome	3
sly00073	Cutin, suberine and wax biosynthesis	2
sly00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00350	Tyrosine metabolism	2
sly01240	Biosynthesis of cofactors	2
sly00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00900	Terpenoid backbone biosynthesis	2
zma02010	ABC transporters	2
zma04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00592	alpha-Linolenic acid metabolism	4
ppo03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00710	Carbon fixation by Calvin cycle	5
mtr01200	Carbon metabolism	5
mtr00010	Glycolysis / Gluconeogenesis	4
mtr00030	Pentose phosphate pathway	4
mtr00051	Fructose and mannose metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00910	Nitrogen metabolism	2
hvu01310	Nitrogen cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00196	Photosynthesis - antenna proteins	5
ghi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	4
bna03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2
sbi00910	Nitrogen metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00900	Terpenoid backbone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	2
sot00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00900	Terpenoid backbone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00230	Purine metabolism	4
nta00250	Alanine, aspartate and glutamate metabolism	4
nta01232	Nucleotide metabolism	4
nta01240	Biosynthesis of cofactors	4
nta03020	RNA polymerase	2

Expression

Expression pattern

Entrez Gene ID^*

5725180

835991

835994

100801810

100789922

100815256

101256886

101249721

101244138

4324755

100283522

100284572

100285459

103851624

100244987

7468564

11410618

123447616

123444854

107891622

107889771

107890967

111212069

8058935

8061664

102581796

102584404

102597403

102628547

100830201

107805010

107773583

The preparation time of this page was 0.2 [sec].


Species	cre	ath	gma	sly	osa	zma	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta	bra
Paralog	1	2	3	3	1	3	1	1	1	2	2	3	3	2	2	1	1	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_17g738250v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_17g738250v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**