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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7468564   dehydrodolichyl diphosphate synthase 2 
 ppo-r.4   7468564   dehydrodolichyl diphosphate synthase 2 
 ppo-m.4   7468564   dehydrodolichyl diphosphate synthase 2 
 gma-u.5   100789922   dehydrodolichyl diphosphate synthase 2 
 gma-u.5   100815256   dehydrodolichyl diphosphate synthase 2 
 gma-u.5   100801810   dehydrodolichyl diphosphate synthase 2 
 mtr-u.5   11410618   dehydrodolichyl diphosphate synthase 2 
 ath-u.5   cPT4   Undecaprenyl pyrophosphate synthetase family protein 
 ath-u.5   AT5G58784   Undecaprenyl pyrophosphate synthetase family protein 
 vvi-u.5   100244987   cis-prenyltransferase 4, chloroplastic 
 sly-u.5   CPT4   cis-prenyltransferase 4 
 sly-u.5   101249721   dehydrodolichyl diphosphate synthase CPT5, chloroplastic 
 sly-u.5   CPT7   dehydrodolichyl diphosphate synthase 2 
 osa-u.5   4324755   cis-prenyltransferase 4, chloroplastic 
 zma-u.5   100283522   undecaprenyl pyrophosphate synthetase 
 zma-u.5   100285459   undecaprenyl pyrophosphate synthetase 
 zma-u.5   100284572   undecaprenyl pyrophosphate synthetase 

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Top 50 coexpressed genes to 7468564 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7468564 (ppo-u.5 coexpression data)

CoexMap"7468564"


ppoLOC7468564 | Entrez gene ID : 7468564    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 3 1 2 1 3 1 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00900 [list] [network] Terpenoid backbone biosynthesis (75 genes)
GO BP
GO:0016094 [list] [network] polyprenol biosynthetic process  (5 genes)  IEA  
GO:0009409 [list] [network] response to cold  (19 genes)  IEA  
GO:0009668 [list] [network] plastid membrane organization  (21 genes)  IEA  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (136 genes)  IEA  
GO MF
Protein XP_002313383.4 [sequence] [blastp]
XP_024464691.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 4,  plas 1  (predict for XP_002313383.4)
chlo 6,  nucl 2,  cyto 1,  plas 1,  cyto_plas 1  (predict for XP_024464691.2)
Subcellular
localization
TargetP
other 7,  chlo 4  (predict for XP_002313383.4)
other 7,  chlo 4  (predict for XP_024464691.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7468564

.
ppo-r.4
for
7468564

.
ppo-m.4
for
7468564

.
gma-u.5
for
100789922

.
gma-u.5
for
100815256

.
gma-u.5
for
100801810

.
mtr-u.5
for
11410618

.
ath-u.5
for
cPT4

.
ath-u.5
for
AT5G58784

.
vvi-u.5
for
100244987

.
sly-u.5
for
CPT4

.
sly-u.5
for
101249721

.
sly-u.5
for
CPT7

.
osa-u.5
for
4324755

.
zma-u.5
for
100283522

.
zma-u.5
for
100285459

.
zma-u.5
for
100284572

.


Ortholog ID: 1680
Species ath ath gma gma sly sly osa zma zma vvi ppo mtr hvu hvu ghi ghi bna cre sbi sot sot cit bdi nta
Symbol cPT4 AT5G58784 LOC100801810 LOC100815256 CPT7 LOC101249721 LOC4324755 LOC100285459 LOC100283522 LOC100244987 LOC7468564 LOC11410618 LOC123447616 LOC123444854 LOC107890967 LOC107889771 LOC111212069 CHLRE_17g738250v5 LOC8058935 LOC102597403 LOC102581796 LOC102628547 LOC100830201 LOC107805010
Function* Undecaprenyl pyrophosphate synthetase family protein Undecaprenyl pyrophosphate synthetase family protein dehydrodolichyl diphosphate synthase 2 dehydrodolichyl diphosphate synthase 2 dehydrodolichyl diphosphate synthase 2 dehydrodolichyl diphosphate synthase CPT5, chloroplastic cis-prenyltransferase 4, chloroplastic undecaprenyl pyrophosphate synthetase undecaprenyl pyrophosphate synthetase cis-prenyltransferase 4, chloroplastic dehydrodolichyl diphosphate synthase 2 dehydrodolichyl diphosphate synthase 2 cis-prenyltransferase 4, chloroplastic-like cis-prenyltransferase 4, chloroplastic-like cis-prenyltransferase 4, chloroplastic cis-prenyltransferase 4, chloroplastic dehydrodolichyl diphosphate synthase 5-like uncharacterized protein isoprenyl transferase dimethylallylcistransferase, chloroplastic-like dehydrodolichyl diphosphate synthase 2-like cis-prenyltransferase 4, chloroplastic-like isoprenyl transferase cis-prenyltransferase 4, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00900 Terpenoid backbone biosynthesis 3
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04146 Peroxisome 3
sly00073 Cutin, suberine and wax biosynthesis 2
sly00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00350 Tyrosine metabolism 2
sly01240 Biosynthesis of cofactors 2
sly00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00592 alpha-Linolenic acid metabolism 4
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00710 Carbon fixation by Calvin cycle 5
mtr01200 Carbon metabolism 5
mtr00010 Glycolysis / Gluconeogenesis 4
mtr00030 Pentose phosphate pathway 4
mtr00051 Fructose and mannose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00910 Nitrogen metabolism 2
hvu01310 Nitrogen cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 2
sbi00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835991 835994 100801810 100815256 101256886 101249721 4324755 100285459 100283522 100244987 7468564 11410618 123447616 123444854 107890967 107889771 111212069 5725180 8058935 102597403 102581796 102628547 100830201 107805010
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