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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_02g096900v5   uncharacterized protein 
 ath-u.5   SEN1   splicing endonuclease 1 
 ath-u.5   SEN2   splicing endonuclease 2 
 gma-u.5   100810335   tRNA-splicing endonuclease subunit Sen2-1-like 
 gma-u.5   100807021   tRNA-splicing endonuclease subunit Sen2-1 
 sly-u.5   101260236   tRNA-splicing endonuclease subunit Sen2-1 
 osa-u.5   4350867   probable tRNA-splicing endonuclease subunit Sen2 
 osa-u.5   4341203   probable tRNA-splicing endonuclease subunit Sen2 
 zma-u.5   100282606   tRNA-splicing endonuclease subunit Sen2 
 bra-r.6   103856576   tRNA-splicing endonuclease subunit Sen2-2 
 vvi-u.5   100255233   tRNA-splicing endonuclease subunit Sen2-1 
 ppo-u.5   7472137   tRNA-splicing endonuclease subunit Sen2-2 
 mtr-u.5   11414349   tRNA-splicing endonuclease subunit Sen2-1 
 tae-r.2   123077107   probable tRNA-splicing endonuclease subunit Sen2 
 tae-r.2   123149784   probable tRNA-splicing endonuclease subunit Sen2 
 hvu-r.1   123410624   probable tRNA-splicing endonuclease subunit Sen2 
 hvu-r.1   123439335   probable tRNA-splicing endonuclease subunit Sen2 
 ghi-r.1   107954459   tRNA-splicing endonuclease subunit Sen2-1 
 ghi-r.1   107942887   tRNA-splicing endonuclease subunit Sen2-1 
 ghi-r.1   107935484   tRNA-splicing endonuclease subunit Sen2-1 
 sbi-r.1   110431285   probable tRNA-splicing endonuclease subunit Sen2 
 sot-r.1   102603151   tRNA-splicing endonuclease subunit Sen2-1-like 
 sot-r.1   102601807   tRNA-splicing endonuclease subunit Sen2-1-like 
 cit-r.1   102624537   tRNA-splicing endonuclease subunit Sen2-1-like 
 bdi-r.1   100821766   probable tRNA-splicing endonuclease subunit Sen2 
 nta-r.1   107830094   tRNA-splicing endonuclease subunit Sen2-1-like 

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Top 50 coexpressed genes to CHLRE_02g096900v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_02g096900v5 (cre-r.1 coexpression data)

CoexMap"5725603"


creCHLRE_02g096900v5 | Entrez gene ID : 5725603    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi sbi sot cit bdi nta bna
Paralog 1 2 2 1 2 1 1 1 1 1 2 2 3 1 2 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000379 [list] [network] tRNA-type intron splice site recognition and cleavage  (3 genes)  IEA  
GO:0006388 [list] [network] tRNA splicing, via endonucleolytic cleavage and ligation  (9 genes)  IEA  
GO CC
GO:0000214 [list] [network] tRNA-intron endonuclease complex  (2 genes)  IEA  
GO MF
GO:0000213 [list] [network] tRNA-intron lyase activity  (2 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (1484 genes)  IEA  
Protein XP_042927284.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  chlo_mito 5,  mito 3,  cyto_mito 1  (predict for XP_042927284.1)
Subcellular
localization
TargetP
mito 9  (predict for XP_042927284.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_02g096900v5
ath-u.5
for
SEN1
ath-u.5
for
SEN2
gma-u.5
for
100810335
gma-u.5
for
100807021
sly-u.5
for
101260236
osa-u.5
for
4350867
osa-u.5
for
4341203
zma-u.5
for
100282606
bra-r.6
for
103856576
vvi-u.5
for
100255233
ppo-u.5
for
7472137
mtr-u.5
for
11414349
tae-r.2
for
123077107
tae-r.2
for
123149784
hvu-r.1
for
123410624
hvu-r.1
for
123439335
ghi-r.1
for
107954459
ghi-r.1
for
107942887
ghi-r.1
for
107935484
sbi-r.1
for
110431285
sot-r.1
for
102603151
sot-r.1
for
102601807
cit-r.1
for
102624537
bdi-r.1
for
100821766
nta-r.1
for
107830094


Ortholog ID: 4924
Species cre ath ath gma gma sly osa osa zma bra vvi ppo mtr tae tae hvu hvu ghi ghi ghi sbi sot sot cit bdi nta
Symbol CHLRE_02g096900v5 SEN1 SEN2 LOC100810335 LOC100807021 LOC101260236 LOC4350867 LOC4341203 LOC100282606 LOC103856576 LOC100255233 LOC7472137 LOC11414349 LOC123060090 LOC123068570 LOC123410624 LOC123439335 LOC107954459 LOC107942887 LOC107935484 LOC110431285 LOC102603151 LOC102601807 LOC102624537 LOC100821766 LOC107830094
Function* uncharacterized protein splicing endonuclease 1 splicing endonuclease 2 tRNA-splicing endonuclease subunit Sen2-1-like tRNA-splicing endonuclease subunit Sen2-1 tRNA-splicing endonuclease subunit Sen2-1 probable tRNA-splicing endonuclease subunit Sen2 probable tRNA-splicing endonuclease subunit Sen2 tRNA-splicing endonuclease subunit Sen2 tRNA-splicing endonuclease subunit Sen2-2 tRNA-splicing endonuclease subunit Sen2-1 tRNA-splicing endonuclease subunit Sen2-2 tRNA-splicing endonuclease subunit Sen2-1 probable tRNA-splicing endonuclease subunit Sen2 probable tRNA-splicing endonuclease subunit Sen2 probable tRNA-splicing endonuclease subunit Sen2 probable tRNA-splicing endonuclease subunit Sen2 tRNA-splicing endonuclease subunit Sen2-1 tRNA-splicing endonuclease subunit Sen2-1 tRNA-splicing endonuclease subunit Sen2-1 probable tRNA-splicing endonuclease subunit Sen2 tRNA-splicing endonuclease subunit Sen2-1-like tRNA-splicing endonuclease subunit Sen2-1-like tRNA-splicing endonuclease subunit Sen2-1-like probable tRNA-splicing endonuclease subunit Sen2 tRNA-splicing endonuclease subunit Sen2-1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03083 Polycomb repressive complex 2
zma00270 Cysteine and methionine metabolism 2
zma00670 One carbon pool by folate 2
zma03250 Viral life cycle - HIV-1 2
zma03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 6
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5725603 823701 836145 100810335 100807021 101260236 4350867 4341203 100282606 103856576 100255233 7472137 11414349 123060090 123068570 123410624 123439335 107954459 107942887 107935484 110431285 102603151 102601807 102624537 100821766 107830094
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