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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_01g055416v5   U5 snRNP protein, DIM1 family 
 ath-u.5   YLS8   mRNA splicing factor, thioredoxin-like U5 snRNP 
 gma-u.5   DIM1   DIM 1-like protein 
 gma-u.5   100792141   thioredoxin-like protein YLS8 
 sly-u.5   101265686   thioredoxin-like protein YLS8 
 sly-u.5   101263601   thioredoxin-like protein YLS8 
 osa-u.5   4348949   thioredoxin-like protein YLS8 
 osa-u.5   9268087   thioredoxin-like protein YLS8 
 zma-u.5   100282486   uncharacterized LOC100282486 
 bra-r.6   103847147   thioredoxin-like protein YLS8 
 vvi-u.5   100249310   thioredoxin-like protein YLS8 
 ppo-u.5   7456307   thioredoxin-like protein YLS8 
 mtr-u.5   11441608   thioredoxin-like protein YLS8 
 mtr-u.5   11421211   thioredoxin-like protein YLS8 
 mtr-u.5   11433035   thioredoxin-like protein YLS8 
 tae-r.2   123139664   thioredoxin-like protein YLS8 
 tae-r.2   123062384   thioredoxin-like protein YLS8 
 tae-r.2   123046529   thioredoxin-like protein YLS8 
 hvu-r.1   123447468   thioredoxin-like protein YLS8 
 hvu-r.1   123431930   thioredoxin-like protein YLS8 
 ghi-r.1   107944993   thioredoxin-like protein YLS8 
 ghi-r.1   107944944   thioredoxin-like protein YLS8 
 bna-r.1   125593081   thioredoxin-like protein YLS8 
 bna-r.1   106419259   thioredoxin-like protein YLS8 
 bna-r.1   106405816   thioredoxin-like protein YLS8 
 sbi-r.1   8075607   thioredoxin-like protein YLS8 
 sbi-r.1   8065492   thioredoxin-like protein YLS8 
 sot-r.1   102586499   thioredoxin-like protein YLS8 
 sot-r.1   102594936   thioredoxin-like protein YLS8 
 cit-r.1   102629695   thioredoxin-like protein YLS8 
 bdi-r.1   100837645   thioredoxin-like protein YLS8 
 bdi-r.1   100837363   thioredoxin-like protein YLS8 
 bdi-r.1   100837346   thioredoxin-like protein YLS8 
 nta-r.1   107819142   thioredoxin-like protein YLS8 
 nta-r.1   107814973   thioredoxin-like protein YLS8 
 nta-r.1   107803633   thioredoxin-like protein YLS8 

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Top 50 coexpressed genes to CHLRE_01g055416v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_01g055416v5 (cre-r.1 coexpression data)

CoexMap"5725783"


creCHLRE_01g055416v5 | Entrez gene ID : 5725783    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 2 2 1 1 1 1 3 3 2 2 3 2 2 1 3 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03040 [list] [network] Spliceosome (105 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (103 genes)  IEA  
GO CC
GO:0005682 [list] [network] U5 snRNP  (11 genes)  IEA  
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex  (18 genes)  IEA  
GO:0005681 [list] [network] spliceosomal complex  (105 genes)  IEA  
GO MF
Protein XP_001700180.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  extr 4,  chlo 1,  golg 1  (predict for XP_001700180.2)
Subcellular
localization
TargetP
other 7,  scret 4  (predict for XP_001700180.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_01g055416v5
ath-u.5
for
YLS8
gma-u.5
for
DIM1
gma-u.5
for
100792141
sly-u.5
for
101265686
sly-u.5
for
101263601
osa-u.5
for
4348949
osa-u.5
for
9268087
zma-u.5
for
100282486
bra-r.6
for
103847147
vvi-u.5
for
100249310
ppo-u.5
for
7456307
mtr-u.5
for
11441608
mtr-u.5
for
11421211
mtr-u.5
for
11433035
tae-r.2
for
123139664
tae-r.2
for
123062384
tae-r.2
for
123046529
hvu-r.1
for
123447468
hvu-r.1
for
123431930
ghi-r.1
for
107944993
ghi-r.1
for
107944944
bna-r.1
for
125593081
bna-r.1
for
106419259
bna-r.1
for
106405816
sbi-r.1
for
8075607
sbi-r.1
for
8065492
sot-r.1
for
102586499
sot-r.1
for
102594936
cit-r.1
for
102629695
bdi-r.1
for
100837645
bdi-r.1
for
100837363
bdi-r.1
for
100837346
nta-r.1
for
107819142
nta-r.1
for
107814973
nta-r.1
for
107803633


Ortholog ID: 3970
Species cre ath gma gma sly sly osa osa zma bra vvi ppo mtr mtr mtr tae tae tae hvu hvu ghi ghi bna bna bna sbi sbi sot sot cit bdi bdi bdi nta nta nta
Symbol CHLRE_01g055416v5 YLS8 DIM1 LOC100792141 LOC101265686 LOC101263601 LOC4348949 LOC9268087 LOC100282486 LOC103847147 LOC100249310 LOC7456307 LOC11441608 LOC11421211 LOC11433035 LOC123182593 LOC123091008 LOC123181130 LOC123447468 LOC123431930 LOC107944993 LOC107944944 LOC106419259 LOC106405816 LOC106385071 LOC8075607 LOC8065492 LOC102586499 LOC102594936 LOC102629695 LOC100837645 LOC100837346 LOC100841012 LOC107819142 LOC107814973 LOC107803633
Function* U5 snRNP protein, DIM1 family mRNA splicing factor, thioredoxin-like U5 snRNP DIM 1-like protein thioredoxin-like protein YLS8 thioredoxin-like protein YLS8 thioredoxin-like protein YLS8 thioredoxin-like protein YLS8 thioredoxin-like protein YLS8 uncharacterized LOC100282486 thioredoxin-like protein YLS8 thioredoxin-like protein YLS8 thioredoxin-like protein YLS8 thioredoxin-like protein YLS8 thioredoxin-like protein YLS8 thioredoxin-like protein YLS8 thioredoxin-like protein YLS8 thioredoxin-like protein YLS8 thioredoxin-like protein YLS8 thioredoxin-like protein YLS8 thioredoxin-like protein YLS8 thioredoxin-like protein YLS8 thioredoxin-like protein YLS8 thioredoxin-like protein YLS8 thioredoxin-like protein YLS8 thioredoxin-like protein YLS8 thioredoxin-like protein YLS8 thioredoxin-like protein YLS8 thioredoxin-like protein YLS8 thioredoxin-like protein YLS8 thioredoxin-like protein YLS8 thioredoxin-like protein YLS8 thioredoxin-like protein YLS8 thioredoxin-like protein YLS8 thioredoxin-like protein YLS8 thioredoxin-like protein YLS8 thioredoxin-like protein YLS8
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04142 Lysosome 5
ath04141 Protein processing in endoplasmic reticulum 3
ath00190 Oxidative phosphorylation 3
ath04145 Phagosome 3
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
gma00190 Oxidative phosphorylation 3
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 10
gma00190 Oxidative phosphorylation 4
gma03040 Spliceosome 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 5
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 5
zma03083 Polycomb repressive complex 2
zma04141 Protein processing in endoplasmic reticulum 2
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 4
bra03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 5
ppo04144 Endocytosis 4
ppo04145 Phagosome 3
ppo04148 Efferocytosis 3
ppo03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 9
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 5
mtr03040 Spliceosome 2
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 5
tae04016 MAPK signaling pathway - plant 3
tae00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 4
hvu04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 3
hvu04144 Endocytosis 2
hvu03040 Spliceosome 2
hvu03083 Polycomb repressive complex 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 8
bna03013 Nucleocytoplasmic transport 4
bna03015 mRNA surveillance pathway 4
bna04144 Endocytosis 4
bna04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna04144 Endocytosis 5
bna00190 Oxidative phosphorylation 2
bna04142 Lysosome 2
bna04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna04144 Endocytosis 3
bna04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03083 Polycomb repressive complex 2
sbi04120 Ubiquitin mediated proteolysis 2
sbi04141 Protein processing in endoplasmic reticulum 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
bdi04120 Ubiquitin mediated proteolysis 4
bdi03083 Polycomb repressive complex 2
bdi04141 Protein processing in endoplasmic reticulum 2
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
bdi04120 Ubiquitin mediated proteolysis 4
bdi03083 Polycomb repressive complex 2
bdi04141 Protein processing in endoplasmic reticulum 2
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta04141 Protein processing in endoplasmic reticulum 3
nta00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta04141 Protein processing in endoplasmic reticulum 3
nta00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 9
nta03040 Spliceosome 5
nta04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5725783 830725 547722 100792141 101265686 101263601 4348949 9268087 100282486 103847147 100249310 7456307 11441608 11421211 11433035 123182593 123091008 123181130 123447468 123431930 107944993 107944944 106419259 106405816 106385071 8075607 8065492 102586499 102594936 102629695 100837645 100837346 100841012 107819142 107814973 107803633
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