ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_17g741100v5	uncharacterized protein
ath-u.5	AT1G17130	coiled-coil protein (DUF572)
gma-u.5	100817564	splicing factor YJU2
gma-u.5	100816349	unknown LOC100816349
sly-u.5	101245976	uncharacterized LOC101245976
osa-u.5	4324443	uncharacterized LOC4324443
zma-u.5	100381597	uncharacterized LOC100381597
bra-r.6	103872498	splicing factor YJU2
bra-r.6	103842809	splicing factor YJU2
vvi-u.5	100246531	uncharacterized LOC100246531
ppo-u.5	7459112	uncharacterized LOC7459112
ppo-u.5	7471891	uncharacterized LOC7471891
mtr-u.5	25487079	splicing factor YJU2
mtr-u.5	25484390	splicing factor YJU2
mtr-u.5	11434991	splicing factor YJU2
tae-r.2	123061371	splicing factor YJU2
tae-r.2	123053374	splicing factor YJU2
tae-r.2	123070019	splicing factor YJU2
hvu-r.1	123426786	splicing factor YJU2-like
hvu-r.1	123443774	splicing factor YJU2-like
ghi-r.1	107927515	splicing factor YJU2
ghi-r.1	107903323	splicing factor YJU2
ghi-r.1	107903333	splicing factor YJU2
bna-r.1	106447225	splicing factor YJU2
bna-r.1	106415907	splicing factor YJU2
bna-r.1	106434924	splicing factor YJU2
sbi-r.1	8081483	coiled-coil domain-containing protein 94
sot-r.1	102589799	coiled-coil domain-containing protein 94
cit-r.1	102627758	uncharacterized LOC102627758
bdi-r.1	100828793	coiled-coil domain-containing protein 94
nta-r.1	107807710	uncharacterized LOC107807710
nta-r.1	107800801	uncharacterized LOC107800801
nta-r.1	107786178	uncharacterized LOC107786178

Top 50 coexpressed genes to CHLRE_17g741100v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_17g741100v5 (cre-r.1 coexpression data)

CoexMap"5726653"

[Cytoscape]

Annotation

functional annotation

KEGG

cre03040 [list] [network] Spliceosome (105 genes)

GO BP

GO:0000398 [list] [network] mRNA splicing, via spliceosome

(103 genes)

IEA

GO CC

GO:0071006 [list] [network] U2-type catalytic step 1 spliceosome

(4 genes)

IEA

GO MF

Protein

XP_001701087.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, mito 2

(predict for XP_001701087.2)

Subcellular
localization
TargetP

other 7, mito 3

(predict for XP_001701087.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_17g741100v5	ath-u.5 for AT1G17130	gma-u.5 for 100817564	gma-u.5 for 100816349	sly-u.5 for 101245976	osa-u.5 for 4324443	zma-u.5 for 100381597	bra-r.6 for 103872498	bra-r.6 for 103842809	vvi-u.5 for 100246531	ppo-u.5 for 7459112	ppo-u.5 for 7471891	mtr-u.5 for 25487079	mtr-u.5 for 25484390	mtr-u.5 for 11434991	tae-r.2 for 123061371	tae-r.2 for 123053374	tae-r.2 for 123070019	hvu-r.1 for 123426786	hvu-r.1 for 123443774	ghi-r.1 for 107927515	ghi-r.1 for 107903323	ghi-r.1 for 107903333	bna-r.1 for 106447225	bna-r.1 for 106415907	bna-r.1 for 106434924	sbi-r.1 for 8081483	sot-r.1 for 102589799	cit-r.1 for 102627758	bdi-r.1 for 100828793	nta-r.1 for 107807710	nta-r.1 for 107800801	nta-r.1 for 107786178

Ortholog

Ortholog ID: 5409

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

coiled-coil protein (DUF572)

splicing factor YJU2

unknown LOC100816349

uncharacterized LOC101245976

uncharacterized LOC4324443

uncharacterized LOC100381597

splicing factor YJU2

uncharacterized LOC100246531

uncharacterized LOC7459112

uncharacterized LOC7471891

splicing factor YJU2

splicing factor YJU2-like

splicing factor YJU2

coiled-coil domain-containing protein 94

uncharacterized LOC102627758

coiled-coil domain-containing protein 94

uncharacterized LOC107807710

uncharacterized LOC107786178

uncharacterized LOC107769301

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04141	Protein processing in endoplasmic reticulum	2
cre04120	Ubiquitin mediated proteolysis	2
cre03040	Spliceosome	2
cre03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	2
gma04144	Endocytosis	2
gma04136	Autophagy - other	2
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	3
gma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	5
bra03250	Viral life cycle - HIV-1	2
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	4
bra03250	Viral life cycle - HIV-1	2
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	3
ppo03015	mRNA surveillance pathway	3
ppo03013	Nucleocytoplasmic transport	2
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	5
mtr04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	4
tae03050	Proteasome	3
tae03040	Spliceosome	3
tae03015	mRNA surveillance pathway	3
tae00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3
tae04814	Motor proteins	3
tae04016	MAPK signaling pathway - plant	2
tae04070	Phosphatidylinositol signaling system	2
tae04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04136	Autophagy - other	2
hvu04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	3
ghi03018	RNA degradation	2
ghi03040	Spliceosome	2
ghi00520	Amino sugar and nucleotide sugar metabolism	2
ghi01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	3
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	5
sbi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	4
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00970	Aminoacyl-tRNA biosynthesis	3
nta03040	Spliceosome	3
nta03015	mRNA surveillance pathway	2

Expression

Expression pattern

Entrez Gene ID^*

5726653

838283

100817564

100816349

101245976

4324443

100381597

103872498

103842809

100246531

7459112

7471891

25487079

25484390

11434991

123053374

123070019

123189282

123426786

123443774

107927515

107903323

107903333

106447225

106415907

106434924

8081483

102589799

102627758

100828793

107807710

107786178

107769301

The preparation time of this page was 0.1 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	2	1	1	1	2	1	2	3	3	2	3	3	1	1	1	1	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_17g741100v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_17g741100v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**