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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_17g741100v5   uncharacterized protein 
 ath-u.5   AT1G17130   coiled-coil protein (DUF572) 
 gma-u.5   100817564   splicing factor YJU2 
 gma-u.5   100816349   unknown LOC100816349 
 sly-u.5   101245976   uncharacterized LOC101245976 
 osa-u.5   4324443   uncharacterized LOC4324443 
 zma-u.5   100381597   uncharacterized LOC100381597 
 vvi-u.5   100246531   uncharacterized LOC100246531 
 ppo-u.5   7459112   uncharacterized LOC7459112 
 ppo-u.5   7471891   uncharacterized LOC7471891 
 mtr-u.5   25487079   splicing factor YJU2 
 mtr-u.5   25484390   splicing factor YJU2 
 mtr-u.5   11434991   splicing factor YJU2 

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Top 50 coexpressed genes to CHLRE_17g741100v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_17g741100v5 (cre-r.1 coexpression data)

CoexMap"5726653"


creCHLRE_17g741100v5 | Entrez gene ID : 5726653    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03040 [list] [network] Spliceosome (105 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (103 genes)  IEA  
GO CC
GO:0071006 [list] [network] U2-type catalytic step 1 spliceosome  (4 genes)  IEA  
GO MF
Protein XP_001701087.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  mito 2  (predict for XP_001701087.2)
Subcellular
localization
TargetP
other 7,  mito 3  (predict for XP_001701087.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_17g741100v5

.
ath-u.5
for
AT1G17130

.
gma-u.5
for
100817564

.
gma-u.5
for
100816349

.
sly-u.5
for
101245976

.
osa-u.5
for
4324443

.
zma-u.5
for
100381597

.
vvi-u.5
for
100246531

.
ppo-u.5
for
7459112

.
ppo-u.5
for
7471891

.
mtr-u.5
for
25487079

.
mtr-u.5
for
25484390

.
mtr-u.5
for
11434991

.


Ortholog ID: 5409
Species ath gma gma sly osa zma bra bra vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT1G17130 LOC100817564 LOC100816349 LOC101245976 LOC4324443 LOC100381597 LOC103872498 LOC103842809 LOC100246531 LOC7471891 LOC7459112 LOC25484390 LOC25487079 LOC123189282 LOC123053374 LOC123443774 LOC123426786 LOC107903323 LOC107903333 LOC106415907 LOC106434924 CHLRE_17g741100v5 LOC8081483 LOC102589799 LOC102627758 LOC100828793 LOC107786178 LOC107769301
Function* coiled-coil protein (DUF572) splicing factor YJU2 unknown LOC100816349 uncharacterized LOC101245976 uncharacterized LOC4324443 uncharacterized LOC100381597 splicing factor YJU2 splicing factor YJU2 uncharacterized LOC100246531 uncharacterized LOC7471891 uncharacterized LOC7459112 splicing factor YJU2 splicing factor YJU2 splicing factor YJU2 splicing factor YJU2 splicing factor YJU2-like splicing factor YJU2-like splicing factor YJU2 splicing factor YJU2 splicing factor YJU2 splicing factor YJU2 uncharacterized protein coiled-coil domain-containing protein 94 coiled-coil domain-containing protein 94 uncharacterized LOC102627758 coiled-coil domain-containing protein 94 uncharacterized LOC107786178 uncharacterized LOC107769301
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
gma04144 Endocytosis 2
gma04136 Autophagy - other 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra03250 Viral life cycle - HIV-1 2
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
bra03250 Viral life cycle - HIV-1 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 3
ppo03015 mRNA surveillance pathway 3
ppo03013 Nucleocytoplasmic transport 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 5
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae04814 Motor proteins 3
tae04016 MAPK signaling pathway - plant 2
tae04070 Phosphatidylinositol signaling system 2
tae04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04136 Autophagy - other 2
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 3
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
ghi00520 Amino sugar and nucleotide sugar metabolism 2
ghi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 3
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04141 Protein processing in endoplasmic reticulum 2
cre04120 Ubiquitin mediated proteolysis 2
cre03040 Spliceosome 2
cre03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 5
sbi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 4
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
nta03040 Spliceosome 3
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838283 100817564 100816349 101245976 4324443 100381597 103872498 103842809 100246531 7471891 7459112 25484390 25487079 123189282 123053374 123443774 123426786 107903323 107903333 106415907 106434924 5726653 8081483 102589799 102627758 100828793 107786178 107769301
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