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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_02g086050v5   uncharacterized protein 
 ath-u.5   AT1G34150   Pseudouridine synthase family protein 
 gma-u.5   100819075   tRNA pseudouridine(38/39) synthase 
 gma-u.5   100805965   tRNA pseudouridine(38/39) synthase 
 sly-u.5   101259148   uncharacterized LOC101259148 
 osa-u.5   4332977   uncharacterized LOC4332977 
 zma-u.5   100279238   pseudouridylate synthase 
 bra-r.6   103840022   tRNA pseudouridine(38/39) synthase 
 vvi-u.5   100244254   uncharacterized LOC100244254 
 ppo-u.5   7468747   uncharacterized LOC7468747 
 mtr-u.5   25485024   tRNA pseudouridine(38/39) synthase 
 tae-r.2   123060259   tRNA pseudouridine(38/39) synthase 
 tae-r.2   123077271   tRNA pseudouridine(38/39) synthase 
 tae-r.2   123068763   tRNA pseudouridine(38/39) synthase-like 
 hvu-r.1   123442795   tRNA pseudouridine(38/39) synthase 
 ghi-r.1   107944162   tRNA pseudouridine(38/39) synthase 
 ghi-r.1   107910479   tRNA pseudouridine(38/39) synthase 
 bna-r.1   106434519   tRNA pseudouridine(38/39) synthase 
 bna-r.1   106436100   tRNA pseudouridine(38/39) synthase 
 sbi-r.1   8080753   tRNA pseudouridine(38/39) synthase 
 sot-r.1   102588947   tRNA pseudouridine(38/39) synthase 
 cit-r.1   102614033   uncharacterized LOC102614033 
 nta-r.1   107821638   uncharacterized LOC107821638 
 nta-r.1   107793603   uncharacterized LOC107793603 

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Top 50 coexpressed genes to CHLRE_02g086050v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_02g086050v5 (cre-r.1 coexpression data)

CoexMap"5727393"


creCHLRE_02g086050v5 | Entrez gene ID : 5727393    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit nta bdi
Paralog 1 1 2 1 1 1 1 1 1 1 3 1 2 2 1 1 1 2 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031119 [list] [network] tRNA pseudouridine synthesis  (8 genes)  IEA  
GO:1990481 [list] [network] mRNA pseudouridine synthesis  (8 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (2907 genes)  IEA  
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (23 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_042926965.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  mito 4,  cyto 1,  plas 1,  pero 1,  cyto_E.R. 1  (predict for XP_042926965.1)
Subcellular
localization
TargetP
other 4,  mito 3  (predict for XP_042926965.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_02g086050v5
ath-u.5
for
AT1G34150
gma-u.5
for
100819075
gma-u.5
for
100805965
sly-u.5
for
101259148
osa-u.5
for
4332977
zma-u.5
for
100279238
bra-r.6
for
103840022
vvi-u.5
for
100244254
ppo-u.5
for
7468747
mtr-u.5
for
25485024
tae-r.2
for
123060259
tae-r.2
for
123077271
tae-r.2
for
123068763
hvu-r.1
for
123442795
ghi-r.1
for
107944162
ghi-r.1
for
107910479
bna-r.1
for
106434519
bna-r.1
for
106436100
sbi-r.1
for
8080753
sot-r.1
for
102588947
cit-r.1
for
102614033
nta-r.1
for
107821638
nta-r.1
for
107793603


Ortholog ID: 9825
Species cre ath gma gma sly osa zma bra vvi ppo mtr tae tae tae hvu ghi ghi bna bna sbi sot cit nta nta
Symbol CHLRE_02g086050v5 AT1G34150 LOC100819075 LOC100805965 LOC101259148 LOC4332977 LOC100279238 LOC103840022 LOC100244254 LOC7468747 LOC25485024 LOC123060259 LOC123077271 LOC123068763 LOC123442795 LOC107944162 LOC107910479 LOC106434519 LOC106436100 LOC8080753 LOC102588947 LOC102614033 LOC107821638 LOC107793603
Function* uncharacterized protein Pseudouridine synthase family protein tRNA pseudouridine(38/39) synthase tRNA pseudouridine(38/39) synthase uncharacterized LOC101259148 uncharacterized LOC4332977 pseudouridylate synthase tRNA pseudouridine(38/39) synthase uncharacterized LOC100244254 uncharacterized LOC7468747 tRNA pseudouridine(38/39) synthase tRNA pseudouridine(38/39) synthase tRNA pseudouridine(38/39) synthase tRNA pseudouridine(38/39) synthase-like tRNA pseudouridine(38/39) synthase tRNA pseudouridine(38/39) synthase tRNA pseudouridine(38/39) synthase tRNA pseudouridine(38/39) synthase tRNA pseudouridine(38/39) synthase tRNA pseudouridine(38/39) synthase tRNA pseudouridine(38/39) synthase uncharacterized LOC102614033 uncharacterized LOC107821638 uncharacterized LOC107793603
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01200 Carbon metabolism 4
cre01230 Biosynthesis of amino acids 4
cre00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
tae00310 Lysine degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna04120 Ubiquitin mediated proteolysis 4
bna03082 ATP-dependent chromatin remodeling 2
bna04122 Sulfur relay system 2
bna00540 Lipopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 5
bna03040 Spliceosome 4
bna04120 Ubiquitin mediated proteolysis 4
bna03082 ATP-dependent chromatin remodeling 2
bna00540 Lipopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00510 N-Glycan biosynthesis 3
nta00513 Various types of N-glycan biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5727393 840314 100819075 100805965 101259148 4332977 100279238 103840022 100244254 7468747 25485024 123060259 123077271 123068763 123442795 107944162 107910479 106434519 106436100 8080753 102588947 102614033 107821638 107793603
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