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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100805965   tRNA pseudouridine(38/39) synthase 
 gma-r.7   100805965   tRNA pseudouridine(38/39) synthase 
 gma-u.5   100819075   tRNA pseudouridine(38/39) synthase 
 mtr-u.5   25485024   tRNA pseudouridine(38/39) synthase 
 ppo-u.5   7468747   uncharacterized LOC7468747 
 ath-u.5   AT1G34150   Pseudouridine synthase family protein 
 vvi-u.5   100244254   uncharacterized LOC100244254 
 sly-u.5   101259148   uncharacterized LOC101259148 
 osa-u.5   4332977   uncharacterized LOC4332977 
 zma-u.5   100279238   pseudouridylate synthase 

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Top 50 coexpressed genes to 100805965 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100805965 (gma-u.5 coexpression data)

CoexMap"100805965"


gmaLOC100805965 | Entrez gene ID : 100805965    
Species gma mtr ppo ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 3 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1990481 [list] [network] mRNA pseudouridine synthesis  (7 genes)  IEA  
GO:0031119 [list] [network] tRNA pseudouridine synthesis  (13 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (9233 genes)  IEA  
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (28 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (2019 genes)  IEA  
Protein XP_025983263.1 [sequence] [blastp]
XP_040869294.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 1,  cysk 1,  cysk_nucl 1  (predict for XP_025983263.1)
cyto 6,  nucl 1,  cysk 1,  cysk_nucl 1  (predict for XP_040869294.1)
Subcellular
localization
TargetP
other 8,  scret 4  (predict for XP_025983263.1)
other 8,  scret 4  (predict for XP_040869294.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100805965

.
gma-r.7
for
100805965

.
gma-u.5
for
100819075

.
mtr-u.5
for
25485024

.
ppo-u.5
for
7468747

.
ath-u.5
for
AT1G34150

.
vvi-u.5
for
100244254

.
sly-u.5
for
101259148

.
osa-u.5
for
4332977

.
zma-u.5
for
100279238

.


Ortholog ID: 9825
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit nta nta
Symbol AT1G34150 LOC100805965 LOC101259148 LOC4332977 LOC100279238 LOC103840022 LOC100244254 LOC7468747 LOC25485024 LOC123060259 LOC123068763 LOC123442795 LOC107910479 LOC107944162 LOC106436100 LOC106434519 CHLRE_02g086050v5 LOC8080753 LOC102588947 LOC102614033 LOC107821638 LOC107793603
Function* Pseudouridine synthase family protein tRNA pseudouridine(38/39) synthase uncharacterized LOC101259148 uncharacterized LOC4332977 pseudouridylate synthase tRNA pseudouridine(38/39) synthase uncharacterized LOC100244254 uncharacterized LOC7468747 tRNA pseudouridine(38/39) synthase tRNA pseudouridine(38/39) synthase tRNA pseudouridine(38/39) synthase-like tRNA pseudouridine(38/39) synthase tRNA pseudouridine(38/39) synthase tRNA pseudouridine(38/39) synthase tRNA pseudouridine(38/39) synthase tRNA pseudouridine(38/39) synthase uncharacterized protein tRNA pseudouridine(38/39) synthase tRNA pseudouridine(38/39) synthase uncharacterized LOC102614033 uncharacterized LOC107821638 uncharacterized LOC107793603
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 5
bna03040 Spliceosome 4
bna04120 Ubiquitin mediated proteolysis 4
bna03082 ATP-dependent chromatin remodeling 2
bna00540 Lipopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna04120 Ubiquitin mediated proteolysis 4
bna03082 ATP-dependent chromatin remodeling 2
bna04122 Sulfur relay system 2
bna00540 Lipopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01200 Carbon metabolism 4
cre01230 Biosynthesis of amino acids 4
cre00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00510 N-Glycan biosynthesis 3
nta00513 Various types of N-glycan biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 840314 100805965 101259148 4332977 100279238 103840022 100244254 7468747 25485024 123060259 123068763 123442795 107910479 107944162 106436100 106434519 5727393 8080753 102588947 102614033 107821638 107793603
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