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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_07g353350v5   uncharacterized protein 
 ath-u.5   TAFII21   TATA binding protein associated factor 21kDa subunit 
 gma-u.5   100527659   uncharacterized LOC100527659 
 gma-u.5   100306277   transcription initiation factor TFIID subunit 9-like 
 sly-u.5   101244946   transcription initiation factor TFIID subunit 9 
 osa-u.5   4333084   transcription initiation factor TFIID subunit 9 
 zma-u.5   118473402   transcription initiation factor TFIID subunit 9 
 zma-u.5   100191949   transcription initiation factor TFIID subunit 9B 
 zma-u.5   100193677   Transcription initiation factor TFIID subunit 9 
 bra-r.6   103832631   transcription initiation factor TFIID subunit 9 
 vvi-u.5   100248023   transcription initiation factor TFIID subunit 9 
 ppo-u.5   7478099   transcription initiation factor TFIID subunit 9 
 mtr-u.5   25494130   transcription initiation factor TFIID subunit 9 
 mtr-u.5   11421562   transcription initiation factor TFIID subunit 9 
 tae-r.2   123062976   transcription initiation factor TFIID subunit 9 
 tae-r.2   123071636   transcription initiation factor TFIID subunit 9 
 hvu-r.1   123445413   transcription initiation factor TFIID subunit 9-like 
 ghi-r.1   107897431   transcription initiation factor TFIID subunit 9 
 ghi-r.1   107913866   transcription initiation factor TFIID subunit 9 
 bna-r.1   106377330   transcription initiation factor TFIID subunit 9 
 bna-r.1   106431665   transcription initiation factor TFIID subunit 9 
 sbi-r.1   8080424   transcription initiation factor TFIID subunit 9 
 sot-r.1   102577826   uncharacterized LOC102577826 
 cit-r.1   102625004   transcription initiation factor TFIID subunit 9 
 cit-r.1   102611696   transcription initiation factor TFIID subunit 9-like 
 bdi-r.1   100828639   transcription initiation factor TFIID subunit 9 
 bdi-r.1   100834532   transcription initiation factor TFIID subunit 9 
 nta-r.1   107810036   transcription initiation factor TFIID subunit 9 
 nta-r.1   107831428   transcription initiation factor TFIID subunit 9 

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Top 50 coexpressed genes to CHLRE_07g353350v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_07g353350v5 (cre-r.1 coexpression data)

CoexMap"5727628"


creCHLRE_07g353350v5 | Entrez gene ID : 5727628      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 1 1 3 1 1 1 2 2 1 2 2 1 1 2 2 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03022 [list] [network] Basal transcription factors (19 genes)
GO BP
GO:0051123 [list] [network] RNA polymerase II preinitiation complex assembly  (9 genes)  IEA  
GO:0006352 [list] [network] DNA-templated transcription initiation  (39 genes)  IEA  
GO CC
GO:0000124 [list] [network] SAGA complex  (12 genes)  IEA  
GO:0005669 [list] [network] transcription factor TFIID complex  (14 genes)  IEA  
GO MF
GO:0016251 [list] [network] RNA polymerase II general transcription initiation factor activity  (14 genes)  IEA  
GO:0003713 [list] [network] transcription coactivator activity  (26 genes)  IEA  
GO:0046982 [list] [network] protein heterodimerization activity  (139 genes)  IEA  
Protein XP_001702038.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 3,  mito 2,  cyto_nucl 2  (predict for XP_001702038.1)
Subcellular
localization
TargetP
other 8  (predict for XP_001702038.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_07g353350v5
ath-u.5
for
TAFII21
gma-u.5
for
100527659
gma-u.5
for
100306277
sly-u.5
for
101244946
osa-u.5
for
4333084
zma-u.5
for
118473402
zma-u.5
for
100191949
zma-u.5
for
100193677
bra-r.6
for
103832631
vvi-u.5
for
100248023
ppo-u.5
for
7478099
mtr-u.5
for
25494130
mtr-u.5
for
11421562
tae-r.2
for
123062976
tae-r.2
for
123071636
hvu-r.1
for
123445413
ghi-r.1
for
107897431
ghi-r.1
for
107913866
bna-r.1
for
106377330
bna-r.1
for
106431665
sbi-r.1
for
8080424
sot-r.1
for
102577826
cit-r.1
for
102625004
cit-r.1
for
102611696
bdi-r.1
for
100828639
bdi-r.1
for
100834532
nta-r.1
for
107810036
nta-r.1
for
107831428


Ortholog ID: 3173
Species cre ath gma gma sly osa zma zma zma bra vvi ppo mtr mtr hvu hvu ghi ghi bna bna sbi sot cit cit bdi bdi nta nta
Symbol CHLRE_07g353350v5 TAFII21 LOC100527659 LOC100306277 LOC101244946 LOC4333084 LOC118473402 LOC100191949 LOC100193677 LOC103832631 LOC100248023 LOC7478099 LOC25494130 LOC11421562 LOC123444739 LOC123444736 LOC107897431 LOC107913866 LOC106377330 LOC106434659 LOC8080424 LOC102577826 LOC102625004 LOC102611696 LOC100828639 LOC100834532 LOC107810036 LOC107831428
Function* uncharacterized protein TATA binding protein associated factor 21kDa subunit uncharacterized LOC100527659 transcription initiation factor TFIID subunit 9-like transcription initiation factor TFIID subunit 9 transcription initiation factor TFIID subunit 9 transcription initiation factor TFIID subunit 9 transcription initiation factor TFIID subunit 9B Transcription initiation factor TFIID subunit 9 transcription initiation factor TFIID subunit 9 transcription initiation factor TFIID subunit 9 transcription initiation factor TFIID subunit 9 transcription initiation factor TFIID subunit 9 transcription initiation factor TFIID subunit 9 transcription initiation factor TFIID subunit 9-like transcription initiation factor TFIID subunit 9-like transcription initiation factor TFIID subunit 9 transcription initiation factor TFIID subunit 9 transcription initiation factor TFIID subunit 9 transcription initiation factor TFIID subunit 9 transcription initiation factor TFIID subunit 9 uncharacterized LOC102577826 transcription initiation factor TFIID subunit 9 transcription initiation factor TFIID subunit 9-like transcription initiation factor TFIID subunit 9 transcription initiation factor TFIID subunit 9 transcription initiation factor TFIID subunit 9 transcription initiation factor TFIID subunit 9
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma03022 Basal transcription factors 2
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 2
sly03022 Basal transcription factors 2
sly03020 RNA polymerase 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03022 Basal transcription factors 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma03022 Basal transcription factors 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00020 Citrate cycle (TCA cycle) 3
mtr01200 Carbon metabolism 3
mtr01210 2-Oxocarboxylic acid metabolism 3
mtr03022 Basal transcription factors 3
mtr00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 6
mtr00020 Citrate cycle (TCA cycle) 3
mtr01200 Carbon metabolism 3
mtr04141 Protein processing in endoplasmic reticulum 2
mtr03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03022 Basal transcription factors 3
hvu04120 Ubiquitin mediated proteolysis 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 4
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
cit03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03022 Basal transcription factors 3
bdi04136 Autophagy - other 2
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03022 Basal transcription factors 3
bdi04136 Autophagy - other 2
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 5
nta03020 RNA polymerase 5
nta03420 Nucleotide excision repair 5
nta03083 Polycomb repressive complex 3
nta04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 5
nta03420 Nucleotide excision repair 5
nta04120 Ubiquitin mediated proteolysis 4
nta03022 Basal transcription factors 2
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5727628 841854 100527659 100306277 101244946 4333084 118473402 100191949 100193677 103832631 100248023 7478099 25494130 11421562 123444739 123444736 107897431 107913866 106377330 106434659 8080424 102577826 102625004 102611696 100828639 100834532 107810036 107831428
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