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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_10g432650v5   uncharacterized protein 
 cre-r.1   CHLRE_06g297904v5   uncharacterized protein 
 ath-u.5   APTX   APRATAXIN-like protein 
 gma-u.5   100786762   transcription factor bHLH140 
 sly-u.5   101257206   transcription factor bHLH140 
 osa-u.5   4332518   transcription factor bHLH140 
 zma-u.5   103634500   transcription factor bHLH140 
 bra-r.6   103847505   transcription factor bHLH140 
 vvi-u.5   100259037   transcription factor bHLH140 
 ppo-u.5   7460370   transcription factor bHLH140 
 mtr-u.5   11415306   transcription factor bHLH140 
 tae-r.2   123092448   transcription factor bHLH140 
 tae-r.2   123085582   transcription factor bHLH140 
 tae-r.2   123097769   transcription factor bHLH140 
 hvu-r.1   123448900   transcription factor bHLH140 
 ghi-r.1   121215903   transcription factor bHLH140 
 ghi-r.1   107899563   transcription factor bHLH140 
 bna-r.1   106435153   transcription factor bHLH140 
 sbi-r.1   8084030   transcription factor bHLH140 
 sot-r.1   102578604   transcription factor bHLH140 
 cit-r.1   102619121   transcription factor bHLH140 
 bdi-r.1   100839576   transcription factor bHLH140 
 nta-r.1   107789889   transcription factor bHLH140 
 nta-r.1   107826076   transcription factor bHLH140 

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Top 50 coexpressed genes to CHLRE_10g432650v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_10g432650v5 (cre-r.1 coexpression data)

CoexMap"5728047"


creCHLRE_10g432650v5 | Entrez gene ID : 5728047      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 2 1 1 1 1 1 1 1 1 1 3 1 2 1 1 1 1 1 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03018 [list] [network] RNA degradation (48 genes)
GO BP
GO:0000290 [list] [network] deadenylation-dependent decapping of nuclear-transcribed mRNA  (5 genes)  IEA  
GO CC
GO:0000932 [list] [network] P-body  (23 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0000340 [list] [network] RNA 7-methylguanosine cap binding  (3 genes)  IEA  
GO:0016787 [list] [network] hydrolase activity  (1498 genes)  IEA  
Protein XP_042920066.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 1,  nucl 1,  extr 1,  chlo_mito 1,  E.R._vacu 1  (predict for XP_042920066.1)
Subcellular
localization
TargetP
other 7  (predict for XP_042920066.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_10g432650v5
cre-r.1
for
CHLRE_06g297904v5
ath-u.5
for
APTX
gma-u.5
for
100786762
sly-u.5
for
101257206
osa-u.5
for
4332518
zma-u.5
for
103634500
bra-r.6
for
103847505
vvi-u.5
for
100259037
ppo-u.5
for
7460370
mtr-u.5
for
11415306
tae-r.2
for
123092448
tae-r.2
for
123085582
tae-r.2
for
123097769
hvu-r.1
for
123448900
ghi-r.1
for
121215903
ghi-r.1
for
107899563
bna-r.1
for
106435153
sbi-r.1
for
8084030
sot-r.1
for
102578604
cit-r.1
for
102619121
bdi-r.1
for
100839576
nta-r.1
for
107789889
nta-r.1
for
107826076


Ortholog ID: 10928
Species cre cre ath gma sly osa zma bra vvi ppo mtr tae tae tae hvu ghi ghi bna sbi sot cit bdi nta nta
Symbol CHLRE_10g432650v5 CHLRE_06g297904v5 APTX LOC100786762 LOC101257206 LOC4332518 LOC103634500 LOC103847505 LOC100259037 LOC7460370 LOC11415306 LOC123092448 LOC123085582 LOC123097769 LOC123448900 LOC121215903 LOC107899563 LOC106435153 LOC8084030 LOC102578604 LOC102619121 LOC100839576 LOC107789889 LOC107826076
Function* uncharacterized protein uncharacterized protein APRATAXIN-like protein transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140 transcription factor bHLH140
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 5
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03022 Basal transcription factors 2
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 3
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 5
tae03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 6
tae03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 3
ghi04070 Phosphatidylinositol signaling system 3
ghi03015 mRNA surveillance pathway 2
ghi04382 Cornified envelope formation 2
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 3
ghi04070 Phosphatidylinositol signaling system 3
ghi03015 mRNA surveillance pathway 2
ghi04382 Cornified envelope formation 2
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna00770 Pantothenate and CoA biosynthesis 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00310 Lysine degradation 2
bdi04120 Ubiquitin mediated proteolysis 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 4
nta00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta00999 Biosynthesis of various plant secondary metabolites 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5728047 5717027 830940 100786762 101257206 4332518 103634500 103847505 100259037 7460370 11415306 123092448 123085582 123097769 123448900 121215903 107899563 106435153 8084030 102578604 102619121 100839576 107789889 107826076
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