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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_10g423650v5   uncharacterized protein 
 ath-u.5   PRPL11   plastid ribosomal protein l11 
 gma-u.5   100306424   uncharacterized LOC100306424 
 sly-u.5   101259181   uncharacterized LOC101259181 
 osa-u.5   4331442   uncharacterized LOC4331442 
 zma-u.5   100285173   50S ribosomal protein L11, chloroplastic-like 
 bra-r.6   103840120   50S ribosomal protein L11, chloroplastic 
 vvi-u.5   100263279   large ribosomal subunit protein uL11c 
 ppo-u.5   18103455   50S ribosomal protein L11, chloroplastic 
 ppo-u.5   7490712   50S ribosomal protein L11, chloroplastic 
 mtr-u.5   11433227   50S ribosomal protein L11, chloroplastic 
 tae-r.2   123105946   50S ribosomal protein L11, chloroplastic 
 tae-r.2   123099005   50S ribosomal protein L11, chloroplastic 
 tae-r.2   123093770   50S ribosomal protein L11, chloroplastic 
 hvu-r.1   123449880   50S ribosomal protein L11, chloroplastic 
 ghi-r.1   107924701   50S ribosomal protein L11, chloroplastic 
 ghi-r.1   107904533   50S ribosomal protein L11, chloroplastic 
 bna-r.1   106418758   50S ribosomal protein L11, chloroplastic-like 
 bna-r.1   106376317   50S ribosomal protein L11, chloroplastic 
 bna-r.1   106367099   50S ribosomal protein L11, chloroplastic 
 sbi-r.1   8085722   50S ribosomal protein L11 
 sot-r.1   102582361   50S ribosomal protein L11 
 cit-r.1   102624880   50S ribosomal protein L11, chloroplastic 
 bdi-r.1   100841775   50S ribosomal protein L11, chloroplastic 
 nta-r.1   107815549   large ribosomal subunit protein uL11c 
 nta-r.1   107817411   large ribosomal subunit protein uL11c 

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Top 50 coexpressed genes to CHLRE_10g423650v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_10g423650v5 (cre-r.1 coexpression data)

CoexMap"5728223"


creCHLRE_10g423650v5 | Entrez gene ID : 5728223      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 1 1 1 1 1 1 2 1 3 1 2 3 1 1 1 1 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006412 [list] [network] translation  (268 genes)  IEA  
GO CC
GO:0015934 [list] [network] large ribosomal subunit  (72 genes)  IEA  
GO:0005840 [list] [network] ribosome  (168 genes)  IEA  
GO MF
GO:0070180 [list] [network] large ribosomal subunit rRNA binding  (6 genes)  IEA  
GO:0003735 [list] [network] structural constituent of ribosome  (164 genes)  IEA  
Protein XP_001702580.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 5,  chlo 4,  cyto 1  (predict for XP_001702580.1)
Subcellular
localization
TargetP
mito 6,  chlo 3  (predict for XP_001702580.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_10g423650v5
ath-u.5
for
PRPL11
gma-u.5
for
100306424
sly-u.5
for
101259181
osa-u.5
for
4331442
zma-u.5
for
100285173
bra-r.6
for
103840120
vvi-u.5
for
100263279
ppo-u.5
for
18103455
ppo-u.5
for
7490712
mtr-u.5
for
11433227
tae-r.2
for
123105946
tae-r.2
for
123099005
tae-r.2
for
123093770
hvu-r.1
for
123449880
ghi-r.1
for
107924701
ghi-r.1
for
107904533
bna-r.1
for
106418758
bna-r.1
for
106376317
bna-r.1
for
106367099
sbi-r.1
for
8085722
sot-r.1
for
102582361
cit-r.1
for
102624880
bdi-r.1
for
100841775
nta-r.1
for
107815549
nta-r.1
for
107817411


Ortholog ID: 9161
Species cre ath gma sly osa zma bra vvi ppo ppo mtr tae tae tae hvu ghi ghi bna bna bna sbi sot cit bdi nta nta
Symbol CHLRE_10g423650v5 PRPL11 LOC100306424 LOC101259181 LOC4331442 LOC100285173 LOC103840120 LOC100263279 LOC18103455 LOC7490712 LOC11433227 LOC123105946 LOC123099005 LOC123093770 LOC123449880 LOC107924701 LOC107904533 LOC106418758 LOC106376317 LOC106367099 LOC8085722 LOC102582361 LOC102624880 LOC100841775 LOC107815549 LOC107817411
Function* uncharacterized protein plastid ribosomal protein l11 uncharacterized LOC100306424 uncharacterized LOC101259181 uncharacterized LOC4331442 50S ribosomal protein L11, chloroplastic-like 50S ribosomal protein L11, chloroplastic large ribosomal subunit protein uL11c 50S ribosomal protein L11, chloroplastic 50S ribosomal protein L11, chloroplastic 50S ribosomal protein L11, chloroplastic 50S ribosomal protein L11, chloroplastic 50S ribosomal protein L11, chloroplastic 50S ribosomal protein L11, chloroplastic 50S ribosomal protein L11, chloroplastic 50S ribosomal protein L11, chloroplastic 50S ribosomal protein L11, chloroplastic 50S ribosomal protein L11, chloroplastic-like 50S ribosomal protein L11, chloroplastic 50S ribosomal protein L11, chloroplastic 50S ribosomal protein L11 50S ribosomal protein L11 50S ribosomal protein L11, chloroplastic 50S ribosomal protein L11, chloroplastic large ribosomal subunit protein uL11c large ribosomal subunit protein uL11c
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 14
bra00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 7
tae01240 Biosynthesis of cofactors 3
tae00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 13
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 11
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 11
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 11
nta00195 Photosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5728223 840194 100306424 101259181 4331442 100285173 103840120 100263279 18103455 7490712 11433227 123105946 123099005 123093770 123449880 107924701 107904533 106418758 106376317 106367099 8085722 102582361 102624880 100841775 107815549 107817411
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