ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_17g746647v5	uncharacterized protein
ath-u.5	PUM3	pumilio 3
ath-u.5	PUM2	pumilio 2
ath-u.5	PUM1	pumilio 1
gma-u.5	100818836	pumilio homolog 2
gma-u.5	100803806	pumilio homolog 2
gma-u.5	100802749	pumilio homolog 2
sly-u.5	101245368	pumilio homolog 2-like
sly-u.5	101246586	pumilio homolog 4-like
sly-u.5	101257175	pumilio homolog 2
osa-u.5	4337585	pumilio homolog 1
osa-u.5	4331160	pumilio homolog 1
osa-u.5	4327511	pumilio homolog 1
zma-u.5	103627898	pumilio homolog 1
zma-u.5	103654114	pumilio homolog 3
zma-u.5	100384506	Pumilio homolog 3
bra-r.6	103859341	pumilio homolog 4
bra-r.6	103864952	pumilio homolog 1
vvi-u.5	100265064	pumilio homolog 2
vvi-u.5	100243338	pumilio homolog 2
vvi-u.5	100242795	pumilio homolog 4
ppo-u.5	7494941	pumilio homolog 4
ppo-u.5	7468626	pumilio homolog 2
mtr-u.5	11415949	pumilio homolog 2
mtr-u.5	11416297	pumilio homolog 4
mtr-u.5	11417387	pumilio homolog 2
tae-r.2	123072823	pumilio homolog 1
tae-r.2	123071394	pumilio homolog 2
tae-r.2	123063676	pumilio homolog 1
hvu-r.1	123444911	pumilio homolog 1-like
hvu-r.1	123441025	pumilio homolog 1-like
hvu-r.1	123402217	pumilio homolog 3-like
ghi-r.1	107885972	pumilio homolog 2
ghi-r.1	107904273	pumilio homolog 4
ghi-r.1	107906572	pumilio homolog 2
bna-r.1	106353009	pumilio homolog 4
bna-r.1	106439244	pumilio homolog 4
bna-r.1	106445423	pumilio homolog 1
sbi-r.1	8067314	pumilio homolog 1
sbi-r.1	8056456	pumilio homolog 1
sbi-r.1	8058896	pumilio homolog 2
sot-r.1	102604169	pumilio homolog 1-like
sot-r.1	102600224	pumilio homolog 1-like
sot-r.1	102600046	pumilio homolog 2-like
cit-r.1	102624631	pumilio homolog 4
cit-r.1	102625650	pumilio homolog 1-like
cit-r.1	102629221	pumilio homolog 2-like
bdi-r.1	100829594	pumilio homolog 2
bdi-r.1	100846732	pumilio homolog 3
bdi-r.1	100846906	pumilio homolog 1
nta-r.1	107761860	pumilio homolog 1-like
nta-r.1	107828552	pumilio homolog 2-like
nta-r.1	107821428	pumilio homolog 2-like

Top 50 coexpressed genes to CHLRE_17g746647v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_17g746647v5 (cre-r.1 coexpression data)

CoexMap"5729128"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0010608 [list] [network] post-transcriptional regulation of gene expression

(142 genes)

IEA

GO CC

GO:0005737 [list] [network] cytoplasm

(2907 genes)

IEA

GO MF

GO:0003729 [list] [network] mRNA binding

(109 genes)

IEA

Protein

XP_042915222.1 [sequence] [blastp]
XP_042915223.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 3, mito 2, plas 1, cyto 1, extr 1, vacu 1, E.R. 1, cysk_nucl 1, golg_plas 1, E.R._vacu 1, cyto_E.R. 1	(predict for XP_042915222.1)
mito 3, chlo 2, mito_plas 2, plas 1, cyto_mito 1	(predict for XP_042915223.1)

Subcellular
localization
TargetP

chlo 4	(predict for XP_042915222.1)
chlo 4	(predict for XP_042915223.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_17g746647v5	ath-u.5 for PUM3	ath-u.5 for PUM2	ath-u.5 for PUM1	gma-u.5 for 100818836	gma-u.5 for 100803806	gma-u.5 for 100802749	sly-u.5 for 101245368	sly-u.5 for 101246586	sly-u.5 for 101257175	osa-u.5 for 4337585	osa-u.5 for 4331160	osa-u.5 for 4327511	zma-u.5 for 103627898	zma-u.5 for 103654114	zma-u.5 for 100384506	bra-r.6 for 103859341	bra-r.6 for 103864952	vvi-u.5 for 100265064	vvi-u.5 for 100243338	vvi-u.5 for 100242795	ppo-u.5 for 7494941	ppo-u.5 for 7468626	mtr-u.5 for 11415949	mtr-u.5 for 11416297	mtr-u.5 for 11417387	tae-r.2 for 123072823	tae-r.2 for 123071394	tae-r.2 for 123063676	hvu-r.1 for 123444911	hvu-r.1 for 123441025	hvu-r.1 for 123402217	ghi-r.1 for 107885972	ghi-r.1 for 107904273	ghi-r.1 for 107906572	bna-r.1 for 106353009	bna-r.1 for 106439244	bna-r.1 for 106445423	sbi-r.1 for 8067314	sbi-r.1 for 8056456	sbi-r.1 for 8058896	sot-r.1 for 102604169	sot-r.1 for 102600224	sot-r.1 for 102600046	cit-r.1 for 102624631	cit-r.1 for 102625650	cit-r.1 for 102629221	bdi-r.1 for 100829594	bdi-r.1 for 100846732	bdi-r.1 for 100846906	nta-r.1 for 107761860	nta-r.1 for 107828552	nta-r.1 for 107821428

Ortholog

Ortholog ID: 950

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

CHLRE_17g746647v5

PUM3

PUM2

PUM1

Function^*

uncharacterized protein

pumilio 3

pumilio 2

pumilio 1

pumilio homolog 4

pumilio homolog 2

pumilio homolog 2-like

pumilio homolog 4-like

pumilio homolog 2

pumilio homolog 1

pumilio homolog 3

uncharacterized LOC100279770

pumilio homolog 4

pumilio homolog 1

pumilio homolog 2

pumilio homolog 4

pumilio homolog 2

pumilio homolog 1

pumilio homolog 2

pumilio homolog 1

pumilio homolog 3

pumilio homolog 1-like

pumilio homolog 4

pumilio homolog 2

pumilio homolog 4

pumilio homolog 1

pumilio homolog 2

pumilio homolog 1-like

pumilio homolog 2-like

pumilio homolog 4

pumilio homolog 1-like

pumilio homolog 2-like

pumilio homolog 2

pumilio homolog 3

pumilio homolog 1

pumilio homolog 4

pumilio homolog 2

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03020	RNA polymerase	3
ath03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	3
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	6
ath03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01230	Biosynthesis of amino acids	3
gma03040	Spliceosome	2
gma00330	Arginine and proline metabolism	2
gma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00330	Arginine and proline metabolism	2
gma01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01200	Carbon metabolism	3
sly00010	Glycolysis / Gluconeogenesis	2
sly00030	Pentose phosphate pathway	2
sly00051	Fructose and mannose metabolism	2
sly00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	2
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04136	Autophagy - other	4
zma00562	Inositol phosphate metabolism	2
zma04070	Phosphatidylinositol signaling system	2
zma04145	Phagosome	2
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04136	Autophagy - other	4
zma04120	Ubiquitin mediated proteolysis	2
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00220	Arginine biosynthesis	2
bra00250	Alanine, aspartate and glutamate metabolism	2
bra00910	Nitrogen metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04142	Lysosome	2
vvi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	4
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	4
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	6
tae00030	Pentose phosphate pathway	3
tae00480	Glutathione metabolism	3
tae01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03430	Mismatch repair	4
tae03460	Fanconi anemia pathway	4
tae03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	5
hvu00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	4
ghi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04136	Autophagy - other	6
bna03015	mRNA surveillance pathway	2
bna00514	Other types of O-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	10
bna04144	Endocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	10
bna04144	Endocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	3
sbi03430	Mismatch repair	2
sbi03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04146	Peroxisome	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03013	Nucleocytoplasmic transport	2
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4
cit00970	Aminoacyl-tRNA biosynthesis	2
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	3
bdi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03083	Polycomb repressive complex	2
bdi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	3
bdi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00514	Other types of O-glycan biosynthesis	2
nta03083	Polycomb repressive complex	2
nta04142	Lysosome	2

Expression

Expression pattern

Entrez Gene ID^*

5729128

817463

817468

817469

100798281

100787039

100779564

101245368

101246586

101257175

4337585

4331160

4327511

103627898

103654114

100279770

103859341

103864952

100265064

100243338

100242795

7494941

7468626

7490383

11415949

11417387

11427522

123062572

123080987

123139891

123444911

123441025

123445685

107904273

107906572

107942403

106439244

106445423

106446948

8067314

8056456

8058896

102600224

102600046

102587757

102624631

102625650

102629221

100829594

100846732

100846906

107803666

107793448

107766528

The preparation time of this page was 0.2 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	3	3	3	3	3	2	3	2	3	3	3	3	3	3	3	3	3	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_17g746647v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_17g746647v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**