ATTED-II : GeneCoexpression result

Species	Gene	Description
gma-u.5	100802749	pumilio homolog 2
gma-r.7	100802749	pumilio homolog 2
gma-m.5	100802749	pumilio homolog 2
gma-u.5	100818836	pumilio homolog 2
gma-u.5	100798281	pumilio homolog 4
gma-u.5	100787039	pumilio homolog 2
mtr-u.5	11416297	pumilio homolog 4
mtr-u.5	11417387	pumilio homolog 2
mtr-u.5	11427522	pumilio homolog 1
ppo-u.5	7487970	pumilio homolog 1
ppo-u.5	7494941	pumilio homolog 4
ath-u.5	PUM3	pumilio 3
ath-u.5	PUM2	pumilio 2
ath-u.5	PUM1	pumilio 1
vvi-u.5	100265064	pumilio homolog 2
vvi-u.5	100243338	pumilio homolog 2
vvi-u.5	100242795	pumilio homolog 4
sly-u.5	101245368	pumilio homolog 2-like
sly-u.5	101246586	pumilio homolog 4-like
sly-u.5	101257175	pumilio homolog 2
osa-u.5	4327511	pumilio homolog 1
osa-u.5	4331160	pumilio homolog 1
osa-u.5	4337585	pumilio homolog 1
zma-u.5	100384506	Pumilio homolog 3
zma-u.5	100279770	uncharacterized LOC100279770
zma-u.5	103627898	pumilio homolog 1

Annotation

functional annotation

KEGG

GO BP

GO:0010608 [list] [network] post-transcriptional regulation of gene expression

(198 genes)

IEA

GO CC

GO:0005737 [list] [network] cytoplasm

(9233 genes)

IEA

GO MF

GO:0003729 [list] [network] mRNA binding

(563 genes)

IEA

Protein

XP_003537978.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 4

(predict for XP_003537978.1)

Subcellular
localization
TargetP

other 8

(predict for XP_003537978.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100802749 .	gma-r.7 for 100802749 .	gma-m.5 for 100802749 .	gma-u.5 for 100818836 .	gma-u.5 for 100798281 .	gma-u.5 for 100787039 .	mtr-u.5 for 11416297 .	mtr-u.5 for 11417387 .	mtr-u.5 for 11427522 .	ppo-u.5 for 7487970 .	ppo-u.5 for 7494941 .	ath-u.5 for PUM3 .	ath-u.5 for PUM2 .	ath-u.5 for PUM1 .	vvi-u.5 for 100265064 .	vvi-u.5 for 100243338 .	vvi-u.5 for 100242795 .	sly-u.5 for 101245368 .	sly-u.5 for 101246586 .	sly-u.5 for 101257175 .	osa-u.5 for 4327511 .	osa-u.5 for 4331160 .	osa-u.5 for 4337585 .	zma-u.5 for 100384506 .	zma-u.5 for 100279770 .	zma-u.5 for 103627898 .

Ortholog

Ortholog ID: 950

Species

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

cre

sbi

sot

cit

bdi

nta

Symbol

PUM3

PUM2

Function^*

pumilio 3

pumilio 2

pumilio homolog 2

pumilio homolog 4

pumilio homolog 4-like

pumilio homolog 2-like

pumilio homolog 1

uncharacterized LOC100279770

pumilio homolog 1

pumilio homolog 4

pumilio homolog 2

pumilio homolog 4

pumilio homolog 1

pumilio homolog 2

pumilio homolog 1

pumilio homolog 1-like

pumilio homolog 2

pumilio homolog 4

pumilio homolog 1

uncharacterized protein

pumilio homolog 2

pumilio homolog 1

pumilio homolog 1-like

pumilio homolog 2-like

pumilio homolog 1-like

pumilio homolog 1

pumilio homolog 3

pumilio homolog 2

pumilio homolog 1

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03020	RNA polymerase	3
ath03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	3
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00330	Arginine and proline metabolism	2
gma01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01200	Carbon metabolism	3
sly00010	Glycolysis / Gluconeogenesis	2
sly00030	Pentose phosphate pathway	2
sly00051	Fructose and mannose metabolism	2
sly00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04136	Autophagy - other	4
zma00562	Inositol phosphate metabolism	2
zma04070	Phosphatidylinositol signaling system	2
zma04145	Phagosome	2
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00220	Arginine biosynthesis	2
bra00250	Alanine, aspartate and glutamate metabolism	2
bra00910	Nitrogen metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04142	Lysosome	2
vvi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	4
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	4
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03430	Mismatch repair	4
tae03460	Fanconi anemia pathway	4
tae03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	6
tae00030	Pentose phosphate pathway	3
tae00480	Glutathione metabolism	3
tae01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	5
hvu00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04136	Autophagy - other	6
bna03015	mRNA surveillance pathway	2
bna00514	Other types of O-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	10
bna04144	Endocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04146	Peroxisome	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4
cit00970	Aminoacyl-tRNA biosynthesis	2
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	3
bdi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03083	Polycomb repressive complex	2
bdi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00514	Other types of O-glycan biosynthesis	2
nta03083	Polycomb repressive complex	2
nta04142	Lysosome	2

Expression

Expression pattern

Entrez Gene ID^*

817463

817468

100779564

100798281

101246586

101245368

4327511

4331160

103627898

100279770

103864952

103859341

100265064

100242795

7494941

7490383

11417387

11415949

123080987

123062572

123441025

123444911

107942403

107906572

106439244

106446948

5729128

8058896

8056456

102600224

102587757

102629221

102625650

100846906

100846732

107766528

107803666

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100802749 (gma-u.5 coexpression data)

Top 50 enrichment test to 100802749 (gma-u.5 coexpression data)


Species	gma	mtr	ppo	ath	vvi	sly	osa	zma	cre	ghi	cit	hvu	bdi	sot	bra	sbi	tae	nta	bna
Paralog	6	3	2	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100802749 (gma-u.5 coexpression data)

Top 50 enrichment test to 100802749 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**