ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_07g328400v5	uncharacterized protein
ath-u.5	TAF15	TBP-associated factor 15
gma-u.5	100793376	transcription initiation factor TFIID subunit 15
gma-u.5	100780819	RNA recognition motif and zinc finger domain-containing protein
sly-u.5	101259398	transcription initiation factor TFIID subunit 15
osa-u.5	4342966	transcription initiation factor TFIID subunit 15
osa-u.5	4346663	transcription initiation factor TFIID subunit 15
zma-u.5	103647642	transcription initiation factor TFIID subunit 15
zma-u.5	103633132	transcription initiation factor TFIID subunit 15
bra-r.6	103871357	transcription initiation factor TFIID subunit 15
bra-r.6	103832884	transcription initiation factor TFIID subunit 15
vvi-u.5	100249627	transcription initiation factor TFIID subunit 15
ppo-u.5	7498166	transcription initiation factor TFIID subunit 15
ppo-u.5	7481594	transcription initiation factor TFIID subunit 15
mtr-u.5	25492824	transcription initiation factor TFIID subunit 15
tae-r.2	123111663	transcription initiation factor TFIID subunit 15
tae-r.2	123103461	transcription initiation factor TFIID subunit 15
tae-r.2	123121150	transcription initiation factor TFIID subunit 15
hvu-r.1	123396356	transcription initiation factor TFIID subunit 15
ghi-r.1	107903634	transcription initiation factor TFIID subunit 15
ghi-r.1	107922565	transcription initiation factor TFIID subunit 15
ghi-r.1	107920484	transcription initiation factor TFIID subunit 15
bna-r.1	106346167	transcription initiation factor TFIID subunit 15-like
bna-r.1	106439038	transcription initiation factor TFIID subunit 15
bna-r.1	106416389	transcription initiation factor TFIID subunit 15-like
sbi-r.1	8077228	transcription initiation factor TFIID subunit 15
sot-r.1	102585899	transcription initiation factor TFIID subunit 15
cit-r.1	102616121	transcription initiation factor TFIID subunit 15
bdi-r.1	100833358	transcription initiation factor TFIID subunit 15
nta-r.1	107794760	transcription initiation factor TFIID subunit 15
nta-r.1	107808208	transcription initiation factor TFIID subunit 15

Top 50 coexpressed genes to CHLRE_07g328400v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_07g328400v5 (cre-r.1 coexpression data)

CoexMap"66054044"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(405 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(1576 genes)

IEA

GO MF

GO:0003712 [list] [network] transcription coregulator activity	(73 genes)	IEA
GO:0003723 [list] [network] RNA binding	(670 genes)	IEA

Protein

XP_042922709.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10

(predict for XP_042922709.1)

Subcellular
localization
TargetP

other 8

(predict for XP_042922709.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_07g328400v5	ath-u.5 for TAF15	gma-u.5 for 100793376	gma-u.5 for 100780819	sly-u.5 for 101259398	osa-u.5 for 4342966	osa-u.5 for 4346663	zma-u.5 for 103647642	zma-u.5 for 103633132	bra-r.6 for 103871357	bra-r.6 for 103832884	vvi-u.5 for 100249627	ppo-u.5 for 7498166	ppo-u.5 for 7481594	mtr-u.5 for 25492824	tae-r.2 for 123111663	tae-r.2 for 123103461	tae-r.2 for 123121150	hvu-r.1 for 123396356	ghi-r.1 for 107903634	ghi-r.1 for 107922565	ghi-r.1 for 107920484	bna-r.1 for 106346167	bna-r.1 for 106439038	bna-r.1 for 106416389	sbi-r.1 for 8077228	sot-r.1 for 102585899	cit-r.1 for 102616121	bdi-r.1 for 100833358	nta-r.1 for 107794760	nta-r.1 for 107808208

Ortholog

Ortholog ID: 6419

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

TAF15

Function^*

uncharacterized protein

TBP-associated factor 15

transcription initiation factor TFIID subunit 15

RNA recognition motif and zinc finger domain-containing protein

transcription initiation factor TFIID subunit 15

transcription initiation factor TFIID subunit 15-like

transcription initiation factor TFIID subunit 15

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	13
cre03013	Nucleocytoplasmic transport	3
cre03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3
ath03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	7
sly03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	4
osa03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	4
zma04122	Sulfur relay system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	7
zma03015	mRNA surveillance pathway	2
zma04122	Sulfur relay system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3
vvi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3
mtr03015	mRNA surveillance pathway	2
mtr03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	5
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03250	Viral life cycle - HIV-1	3
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	6
ghi03250	Viral life cycle - HIV-1	4
ghi03040	Spliceosome	2
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03250	Viral life cycle - HIV-1	3
ghi03015	mRNA surveillance pathway	3
ghi03040	Spliceosome	2
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	4
bna03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	4
sbi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	9
nta03013	Nucleocytoplasmic transport	2
nta03015	mRNA surveillance pathway	2

Expression

Expression pattern

Entrez Gene ID^*

66054044

841452

100793376

100780819

101259398

4342966

4346663

103647642

103633132

103871357

103832884

100249627

7498166

7481594

25492824

123111663

123103461

123121150

123396356

107903634

107922565

107920484

106439038

106416389

106406267

8077228

102585899

102616121

100833358

107794760

107808208

The preparation time of this page was 0.1 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	2	1	2	2	2	1	2	1	3	1	3	3	1	1	1	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_07g328400v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_07g328400v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**