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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g556450v5   uncharacterized protein 
 ath-u.5   MED10A   Mediator complex, subunit Med10 
 ath-u.5   AT1G26665   Mediator complex, subunit Med10 
 gma-u.5   100806084   mediator of RNA polymerase II transcription subunit 10-like 
 gma-u.5   100797517   mediator of RNA polymerase II transcription subunit 10b 
 sly-u.5   101259273   mediator of RNA polymerase II transcription subunit 10b 
 osa-u.5   4347648   mediator of RNA polymerase II transcription subunit 10b 
 zma-u.5   100283957   mediator complex subunit 10 CG5057-PA 
 zma-u.5   100284160   mediator complex subunit 10 CG5057-PA 
 bra-r.6   103829197   mediator of RNA polymerase II transcription subunit 10b 
 vvi-u.5   100263293   mediator of RNA polymerase II transcription subunit 10b 
 ppo-u.5   7477820   mediator of RNA polymerase II transcription subunit 10b 
 ppo-u.5   7465342   mediator of RNA polymerase II transcription subunit 10b 
 mtr-u.5   11411258   mediator of RNA polymerase II transcription subunit 10b 
 tae-r.2   123071838   mediator of RNA polymerase II transcription subunit 10b 
 tae-r.2   123080164   mediator of RNA polymerase II transcription subunit 10b 
 tae-r.2   123104508   mediator of RNA polymerase II transcription subunit 10b 
 ghi-r.1   121211168   mediator of RNA polymerase II transcription subunit 10b 
 ghi-r.1   121224353   mediator of RNA polymerase II transcription subunit 10b 
 bna-r.1   106360565   mediator of RNA polymerase II transcription subunit 10b 
 bna-r.1   106358097   mediator of RNA polymerase II transcription subunit 10b-like 
 sbi-r.1   8054888   mediator of RNA polymerase II transcription subunit 10b 
 sot-r.1   102597486   mediator of RNA polymerase II transcription subunit 10b-like 
 cit-r.1   102608713   mediator of RNA polymerase II transcription subunit 10b 
 bdi-r.1   100820848   mediator of RNA polymerase II transcription subunit 10b 
 nta-r.1   107826267   mediator of RNA polymerase II transcription subunit 10b-like 
 nta-r.1   107832650   mediator of RNA polymerase II transcription subunit 10b-like 
 nta-r.1   107760978   mediator of RNA polymerase II transcription subunit 10b-like 

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Top 50 coexpressed genes to CHLRE_12g556450v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g556450v5 (cre-r.1 coexpression data)

CoexMap"66055841"


creCHLRE_12g556450v5 | Entrez gene ID : 66055841    
Species cre ath gma sly osa zma bra vvi ppo mtr tae ghi bna sbi sot cit bdi nta hvu
Paralog 1 2 2 1 1 2 1 1 2 1 3 2 2 1 1 1 1 3 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (190 genes)  IEA  
GO CC
GO:0016592 [list] [network] mediator complex  (16 genes)  IEA  
GO MF
GO:0003712 [list] [network] transcription coregulator activity  (73 genes)  IEA  
Protein XP_042918908.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl_plas 3,  plas 3,  nucl 2  (predict for XP_042918908.1)
Subcellular
localization
TargetP
other 7,  chlo 4  (predict for XP_042918908.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g556450v5
ath-u.5
for
MED10A
ath-u.5
for
AT1G26665
gma-u.5
for
100806084
gma-u.5
for
100797517
sly-u.5
for
101259273
osa-u.5
for
4347648
zma-u.5
for
100283957
zma-u.5
for
100284160
bra-r.6
for
103829197
vvi-u.5
for
100263293
ppo-u.5
for
7477820
ppo-u.5
for
7465342
mtr-u.5
for
11411258
tae-r.2
for
123071838
tae-r.2
for
123080164
tae-r.2
for
123104508
ghi-r.1
for
121211168
ghi-r.1
for
121224353
bna-r.1
for
106360565
bna-r.1
for
106358097
sbi-r.1
for
8054888
sot-r.1
for
102597486
cit-r.1
for
102608713
bdi-r.1
for
100820848
nta-r.1
for
107826267
nta-r.1
for
107832650
nta-r.1
for
107760978


Ortholog ID: 4132
Species cre ath ath gma gma sly osa zma zma bra vvi ppo ppo mtr tae tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta nta
Symbol CHLRE_12g556450v5 MED10A AT1G26665 LOC100806084 LOC100797517 LOC101259273 LOC4347648 LOC100283957 LOC100284160 LOC103829197 LOC100263293 LOC7477820 LOC7465342 LOC11411258 LOC123071838 LOC123112793 LOC123122271 LOC123400041 LOC121211168 LOC121224353 LOC106358097 LOC106425555 LOC8054888 LOC102597486 LOC102608713 LOC100820848 LOC107826267 LOC107832650 LOC107760978
Function* uncharacterized protein Mediator complex, subunit Med10 Mediator complex, subunit Med10 mediator of RNA polymerase II transcription subunit 10-like mediator of RNA polymerase II transcription subunit 10b mediator of RNA polymerase II transcription subunit 10b mediator of RNA polymerase II transcription subunit 10b mediator complex subunit 10 CG5057-PA mediator complex subunit 10 CG5057-PA mediator of RNA polymerase II transcription subunit 10b mediator of RNA polymerase II transcription subunit 10b mediator of RNA polymerase II transcription subunit 10b mediator of RNA polymerase II transcription subunit 10b mediator of RNA polymerase II transcription subunit 10b mediator of RNA polymerase II transcription subunit 10b mediator of RNA polymerase II transcription subunit 10b mediator of RNA polymerase II transcription subunit 10b mediator of RNA polymerase II transcription subunit 10b-like mediator of RNA polymerase II transcription subunit 10b mediator of RNA polymerase II transcription subunit 10b mediator of RNA polymerase II transcription subunit 10b-like mediator of RNA polymerase II transcription subunit 10b mediator of RNA polymerase II transcription subunit 10b mediator of RNA polymerase II transcription subunit 10b-like mediator of RNA polymerase II transcription subunit 10b mediator of RNA polymerase II transcription subunit 10b mediator of RNA polymerase II transcription subunit 10b-like mediator of RNA polymerase II transcription subunit 10b-like mediator of RNA polymerase II transcription subunit 10b-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00190 Oxidative phosphorylation 3
cre04145 Phagosome 3
cre03040 Spliceosome 2
cre04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 4
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 3
ath03083 Polycomb repressive complex 2
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
gma04120 Ubiquitin mediated proteolysis 2
gma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03420 Nucleotide excision repair 3
gma04141 Protein processing in endoplasmic reticulum 3
gma00564 Glycerophospholipid metabolism 2
gma00565 Ether lipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 4
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04136 Autophagy - other 3
osa00600 Sphingolipid metabolism 2
osa04142 Lysosome 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 4
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 9
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 9
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 6
bna04141 Protein processing in endoplasmic reticulum 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 6
bna04141 Protein processing in endoplasmic reticulum 6
bna04130 SNARE interactions in vesicular transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00270 Cysteine and methionine metabolism 2
cit03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
nta04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
nta04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
nta04148 Efferocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 66055841 834196 839207 100806084 100797517 101259273 4347648 100283957 100284160 103829197 100263293 7477820 7465342 11411258 123071838 123112793 123122271 123400041 121211168 121224353 106358097 106425555 8054888 102597486 102608713 100820848 107826267 107832650 107760978
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