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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.hor   PSBW   photosystem II reaction center W 
 ath-u.5   PSBW   photosystem II reaction center W 
 ath-r.7   PSBW   photosystem II reaction center W 
 ath-m.9   PSBW   photosystem II reaction center W 
 ath-e.2   PSBW   photosystem II reaction center W 
 ath-m.4.bio   PSBW   photosystem II reaction center W 
 ath-m.4.lig   PSBW   photosystem II reaction center W 
 ath-m.4.str   PSBW   photosystem II reaction center W 
 ath-m.4.tis   PSBW   photosystem II reaction center W 
 bra-r.6   103844007   photosystem II reaction center W protein, chloroplastic 
 bra-r.6   103865053   photosystem II reaction center W protein, chloroplastic 
 bra-r.6   103867946   photosystem II reaction center W protein, chloroplastic 
 bna-r.1   106451413   photosystem II reaction center W protein, chloroplastic 
 bna-r.1   106426387   photosystem II reaction center W protein, chloroplastic 
 bna-r.1   106348393   photosystem II reaction center W protein, chloroplastic 
 ghi-r.1   121219924   photosystem II reaction center W protein, chloroplastic 
 ghi-r.1   107955464   photosystem II reaction center W protein, chloroplastic 
 ghi-r.1   107936736   photosystem II reaction center W protein, chloroplastic 
 cit-r.1   102629478   photosystem II reaction center W protein, chloroplastic 
 cit-r.1   102610209   photosystem II reaction center W protein, chloroplastic-like 
 gma-u.5   100305788   uncharacterized LOC100305788 
 gma-u.5   100499815   uncharacterized LOC100499815 
 gma-u.5   100526966   uncharacterized LOC100526966 
 vvi-u.5   100265702   photosystem II reaction center W protein, chloroplastic 
 vvi-u.5   100256361   photosystem II reaction center W protein, chloroplastic 
 ppo-u.5   7476887   photosystem II reaction center W protein, chloroplastic 
 ppo-u.5   7479997   photosystem II reaction center W protein, chloroplastic 
 mtr-u.5   25484344   photosystem II reaction center W protein, chloroplastic 
 mtr-u.5   25499202   photosystem II reaction center W protein, chloroplastic 
 sly-u.5   101257676   photosystem II reaction center W protein, chloroplastic 
 sly-u.5   101245583   photosystem II reaction center W protein, chloroplastic 
 sot-r.1   102581428   photosystem II reaction center W protein, chloroplastic 
 sot-r.1   102590010   photosystem II reaction center W protein, chloroplastic-like 
 nta-r.1   107802496   photosystem II reaction center W protein, chloroplastic 
 nta-r.1   107825362   photosystem II reaction center W protein, chloroplastic-like 
 nta-r.1   107829490   photosystem II reaction center W protein, chloroplastic 
 osa-u.5   4339270   photosystem II reaction center W protein, chloroplastic-like 
 osa-u.5   4327150   photosystem II reaction center W protein, chloroplastic-like 
 zma-u.5   100283816   uncharacterized LOC100283816 
 zma-u.5   100283835   uncharacterized LOC100283835 
 tae-r.2   123062214   photosystem II reaction center W protein, chloroplastic 
 tae-r.2   123070959   photosystem II reaction center W protein, chloroplastic 
 hvu-r.1   123444546   photosystem II reaction center W protein, chloroplastic-like 
 hvu-r.1   123447707   photosystem II reaction center W protein, chloroplastic-like 
 sbi-r.1   8072144   photosystem II reaction center W protein, chloroplastic 
 sbi-r.1   8080091   photosystem II reaction center W protein, chloroplastic 
 bdi-r.1   100846816   photosystem II reaction center W protein, chloroplastic 
 bdi-r.1   100845994   photosystem II reaction center W protein, chloroplastic 

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Top 50 coexpressed genes to PSBW (ath-m.4.hor coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PSBW (ath-m.4.hor coexpression data)

CoexMap"817606"


athPSBW | Entrez gene ID : 817606      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 3 3 3 2 3 2 2 2 2 2 3 2 2 2 2 2 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00195 [list] [network] Photosynthesis (77 genes)
GO BP
GO:0042549 [list] [network] photosystem II stabilization  (7 genes)  IMP  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
Protein NP_180615.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 1,  cyto 1,  vacu 1,  pero 1,  cyto_mito 1,  cyto_pero 1,  mito_plas 1  (predict for NP_180615.1)
Subcellular
localization
TargetP
chlo 6  (predict for NP_180615.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.hor
for
PSBW
ath-u.5
for
PSBW
ath-r.7
for
PSBW
ath-m.9
for
PSBW
ath-e.2
for
PSBW
ath-m.4.bio
for
PSBW
ath-m.4.lig
for
PSBW
ath-m.4.str
for
PSBW
ath-m.4.tis
for
PSBW
bra-r.6
for
103844007
bra-r.6
for
103865053
bra-r.6
for
103867946
bna-r.1
for
106451413
bna-r.1
for
106426387
bna-r.1
for
106348393
ghi-r.1
for
121219924
ghi-r.1
for
107955464
ghi-r.1
for
107936736
cit-r.1
for
102629478
cit-r.1
for
102610209
gma-u.5
for
100305788
gma-u.5
for
100499815
gma-u.5
for
100526966
vvi-u.5
for
100265702
vvi-u.5
for
100256361
ppo-u.5
for
7476887
ppo-u.5
for
7479997
mtr-u.5
for
25484344
mtr-u.5
for
25499202
sly-u.5
for
101257676
sly-u.5
for
101245583
sot-r.1
for
102581428
sot-r.1
for
102590010
nta-r.1
for
107802496
nta-r.1
for
107825362
nta-r.1
for
107829490
osa-u.5
for
4339270
osa-u.5
for
4327150
zma-u.5
for
100283816
zma-u.5
for
100283835
tae-r.2
for
123062214
tae-r.2
for
123070959
hvu-r.1
for
123444546
hvu-r.1
for
123447707
sbi-r.1
for
8072144
sbi-r.1
for
8080091
bdi-r.1
for
100846816
bdi-r.1
for
100845994


Ortholog ID: 3311
Species ath bra bra bra bna bna bna ghi ghi cit cit gma gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi
Symbol PSBW LOC103844007 LOC103865053 LOC103867946 LOC106426387 LOC106348393 LOC106415703 LOC121219924 LOC107955464 LOC102629478 LOC102610209 LOC100499815 LOC100526966 LOC100306223 LOC100265702 LOC100256361 LOC7476887 LOC7479997 LOC25484344 LOC25499202 LOC101257676 LOC101245583 LOC102581428 LOC102590010 LOC107802496 LOC107825362 LOC107830751 LOC4339270 LOC4327150 LOC100283816 LOC100283835 LOC123079341 LOC123172465 LOC123444546 LOC123447707 LOC8072144 LOC8080091 LOC100846816 LOC100845994
Function* photosystem II reaction center W photosystem II reaction center W protein, chloroplastic photosystem II reaction center W protein, chloroplastic photosystem II reaction center W protein, chloroplastic photosystem II reaction center W protein, chloroplastic photosystem II reaction center W protein, chloroplastic photosystem II reaction center W protein, chloroplastic photosystem II reaction center W protein, chloroplastic photosystem II reaction center W protein, chloroplastic photosystem II reaction center W protein, chloroplastic photosystem II reaction center W protein, chloroplastic-like uncharacterized LOC100499815 uncharacterized LOC100526966 uncharacterized LOC100306223 photosystem II reaction center W protein, chloroplastic photosystem II reaction center W protein, chloroplastic photosystem II reaction center W protein, chloroplastic photosystem II reaction center W protein, chloroplastic photosystem II reaction center W protein, chloroplastic photosystem II reaction center W protein, chloroplastic photosystem II reaction center W protein, chloroplastic photosystem II reaction center W protein, chloroplastic photosystem II reaction center W protein, chloroplastic photosystem II reaction center W protein, chloroplastic-like photosystem II reaction center W protein, chloroplastic photosystem II reaction center W protein, chloroplastic-like photosystem II reaction center W protein, chloroplastic-like photosystem II reaction center W protein, chloroplastic-like photosystem II reaction center W protein, chloroplastic-like uncharacterized LOC100283816 uncharacterized LOC100283835 photosystem II reaction center W protein, chloroplastic photosystem II reaction center W protein, chloroplastic photosystem II reaction center W protein, chloroplastic-like photosystem II reaction center W protein, chloroplastic-like photosystem II reaction center W protein, chloroplastic photosystem II reaction center W protein, chloroplastic photosystem II reaction center W protein, chloroplastic photosystem II reaction center W protein, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 11
ath00196 Photosynthesis - antenna proteins 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 4
bra00630 Glyoxylate and dicarboxylate metabolism 3
bra00260 Glycine, serine and threonine metabolism 2
bra00670 One carbon pool by folate 2
bra00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 12
bra00196 Photosynthesis - antenna proteins 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 10
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 12
bna00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00196 Photosynthesis - antenna proteins 8
ghi00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 9
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 7
cit00710 Carbon fixation by Calvin cycle 4
cit01200 Carbon metabolism 4
cit00010 Glycolysis / Gluconeogenesis 3
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 14
gma00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 9
gma00196 Photosynthesis - antenna proteins 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 12
gma00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 15
vvi00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 10
vvi00196 Photosynthesis - antenna proteins 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 13
ppo00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 10
ppo00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ppo01240 Biosynthesis of cofactors 2
ppo00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 7
mtr00630 Glyoxylate and dicarboxylate metabolism 2
mtr01200 Carbon metabolism 2
mtr04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 15
sly00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 16
sly00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 12
sot00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 15
sot00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 15
nta00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 15
nta00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 15
nta00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 4
osa00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 12
zma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 12
tae00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 9
hvu00196 Photosynthesis - antenna proteins 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00710 Carbon fixation by Calvin cycle 5
hvu01200 Carbon metabolism 5
hvu00195 Photosynthesis 3
hvu00630 Glyoxylate and dicarboxylate metabolism 2
hvu00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00195 Photosynthesis 9
sbi00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00195 Photosynthesis 10
sbi00196 Photosynthesis - antenna proteins 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 11
bdi00196 Photosynthesis - antenna proteins 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817606 103844007 103865053 103867946 106426387 106348393 106415703 121219924 107955464 102629478 102610209 100499815 100526966 100306223 100265702 100256361 7476887 7479997 25484344 25499202 101257676 101245583 102581428 102590010 107802496 107825362 107830751 4339270 4327150 100283816 100283835 123079341 123172465 123444546 123447707 8072144 8080091 100846816 100845994
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