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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.hor   RECA3   RECA homolog 3 
 ath-u.5   RECA3   RECA homolog 3 
 ath-r.7   RECA3   RECA homolog 3 
 ath-m.9   RECA3   RECA homolog 3 
 ath-e.2   RECA3   RECA homolog 3 
 ath-m.4.bio   RECA3   RECA homolog 3 
 ath-m.4.lig   RECA3   RECA homolog 3 
 ath-m.4.str   RECA3   RECA homolog 3 
 ath-m.4.tis   RECA3   RECA homolog 3 
 bra-r.6   103859268   DNA repair protein recA homolog 2, mitochondrial 
 bna-r.1   106439172   DNA repair protein recA homolog 2, mitochondrial-like 
 bna-r.1   106388978   DNA repair protein recA homolog 2, mitochondrial 
 ghi-r.1   107935233   DNA repair protein recA homolog 2, mitochondrial 
 ghi-r.1   107925706   DNA repair protein recA homolog 2, mitochondrial 
 cit-r.1   102612122   DNA repair protein recA homolog 2, mitochondrial 
 gma-u.5   100777423   DNA repair protein recA homolog 2, mitochondrial 
 vvi-u.5   100248558   DNA repair protein recA homolog 2, mitochondrial 
 ppo-u.5   7484023   DNA repair protein recA homolog 2, mitochondrial 
 ppo-u.5   7473604   DNA repair protein recA homolog 2, mitochondrial 
 mtr-u.5   11415363   DNA repair protein recA homolog 2, mitochondrial 
 sly-u.5   101263651   DNA repair protein recA homolog 2, mitochondrial 
 sot-r.1   102590004   DNA repair protein recA homolog 2, mitochondrial 
 nta-r.1   107784664   DNA repair protein recA homolog 2, mitochondrial-like 
 nta-r.1   107798485   DNA repair protein recA homolog 2, mitochondrial 
 osa-u.5   9270244   DNA repair protein recA homolog 2, mitochondrial 
 zma-u.5   100276540   uncharacterized LOC100276540 
 tae-r.2   123080660   DNA repair protein recA homolog 2, mitochondrial 
 hvu-r.1   123445468   DNA repair protein recA homolog 2, mitochondrial 
 sbi-r.1   8062304   DNA repair protein recA homolog 2, mitochondrial 
 bdi-r.1   100840914   DNA repair protein recA homolog 2, mitochondrial 
 bdi-r.1   100830620   DNA repair protein recA homolog 2, mitochondrial 

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Top 50 coexpressed genes to RECA3 (ath-m.4.hor coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RECA3 (ath-m.4.hor coexpression data)

CoexMap"820177"


athRECA3 | Entrez gene ID : 820177      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 2 1 1 1 2 1 1 1 1 1 2 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1905951 [list] [network] mitochondrion DNA recombination  (3 genes)  IGI  
GO:0006281 [list] [network] DNA repair  (203 genes)  IEA  
GO:0009408 [list] [network] response to heat  (271 genes)  IGI  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
GO:0140664 [list] [network] ATP-dependent DNA damage sensor activity  (9 genes)  IEA  
GO:0003697 [list] [network] single-stranded DNA binding  (37 genes)  IEA  
Protein NP_187625.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  chlo_mito 5,  mito 3  (predict for NP_187625.2)
Subcellular
localization
TargetP
mito 8  (predict for NP_187625.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.hor
for
RECA3
ath-u.5
for
RECA3
ath-r.7
for
RECA3
ath-m.9
for
RECA3
ath-e.2
for
RECA3
ath-m.4.bio
for
RECA3
ath-m.4.lig
for
RECA3
ath-m.4.str
for
RECA3
ath-m.4.tis
for
RECA3
bra-r.6
for
103859268
bna-r.1
for
106439172
bna-r.1
for
106388978
ghi-r.1
for
107935233
ghi-r.1
for
107925706
cit-r.1
for
102612122
gma-u.5
for
100777423
vvi-u.5
for
100248558
ppo-u.5
for
7484023
ppo-u.5
for
7473604
mtr-u.5
for
11415363
sly-u.5
for
101263651
sot-r.1
for
102590004
nta-r.1
for
107784664
nta-r.1
for
107798485
osa-u.5
for
9270244
zma-u.5
for
100276540
tae-r.2
for
123080660
hvu-r.1
for
123445468
sbi-r.1
for
8062304
bdi-r.1
for
100840914
bdi-r.1
for
100830620


Ortholog ID: 9467
Species ath bra bna bna ghi ghi cit gma vvi ppo ppo mtr sly sot nta nta osa zma tae hvu sbi bdi bdi
Symbol RECA3 LOC103859268 LOC106439172 LOC106388978 LOC107935233 LOC107925706 LOC102612122 LOC100777423 LOC100248558 LOC7484023 LOC7473604 LOC11415363 LOC101263651 LOC102590004 LOC107784664 LOC107798485 LOC9270244 LOC100276540 LOC123080660 LOC123445468 LOC8062304 LOC100840914 LOC100830620
Function* RECA homolog 3 DNA repair protein recA homolog 2, mitochondrial DNA repair protein recA homolog 2, mitochondrial-like DNA repair protein recA homolog 2, mitochondrial DNA repair protein recA homolog 2, mitochondrial DNA repair protein recA homolog 2, mitochondrial DNA repair protein recA homolog 2, mitochondrial DNA repair protein recA homolog 2, mitochondrial DNA repair protein recA homolog 2, mitochondrial DNA repair protein recA homolog 2, mitochondrial DNA repair protein recA homolog 2, mitochondrial DNA repair protein recA homolog 2, mitochondrial DNA repair protein recA homolog 2, mitochondrial DNA repair protein recA homolog 2, mitochondrial DNA repair protein recA homolog 2, mitochondrial-like DNA repair protein recA homolog 2, mitochondrial DNA repair protein recA homolog 2, mitochondrial uncharacterized LOC100276540 DNA repair protein recA homolog 2, mitochondrial DNA repair protein recA homolog 2, mitochondrial DNA repair protein recA homolog 2, mitochondrial DNA repair protein recA homolog 2, mitochondrial DNA repair protein recA homolog 2, mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00510 N-Glycan biosynthesis 2
cit00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
vvi04144 Endocytosis 2
vvi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00260 Glycine, serine and threonine metabolism 2
nta00460 Cyanoamino acid metabolism 2
nta00630 Glyoxylate and dicarboxylate metabolism 2
nta00670 One carbon pool by folate 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta00260 Glycine, serine and threonine metabolism 2
nta00460 Cyanoamino acid metabolism 2
nta00630 Glyoxylate and dicarboxylate metabolism 2
nta00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 4
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820177 103859268 106439172 106388978 107935233 107925706 102612122 100777423 100248558 7484023 7473604 11415363 101263651 102590004 107784664 107798485 9270244 100276540 123080660 123445468 8062304 100840914 100830620
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