ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.hor	AT4G23930	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
ath-u.5	AT4G23930	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
ath-r.7	AT4G23930	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
ath-m.9	AT4G23930	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
ath-e.2	AT4G23930	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
ath-m.4.bio	AT4G23930	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
ath-m.4.lig	AT4G23930	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
ath-m.4.str	AT4G23930	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
ath-m.4.tis	AT4G23930	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
ath-u.5	AT1G64450	Glycine-rich protein family
bra-r.6	103838166	collagen alpha-1(III) chain
bra-r.6	103861449	uncharacterized LOC103861449
bra-r.6	103861549	uncharacterized LOC103861549
bna-r.1	125593409	collagen alpha-5(IV) chain-like
bna-r.1	BNAA03G46360D	uncharacterized BNAA03G46360D
bna-r.1	106416178	uncharacterized LOC106416178
ghi-r.1	121203555	uncharacterized LOC121203555
ghi-r.1	107947131	uncharacterized LOC107947131
ghi-r.1	107950768	uncharacterized LOC107950768
cit-r.1	102630845	uncharacterized LOC102630845
gma-u.5	100820289	uncharacterized LOC100820289
gma-u.5	100812014	uncharacterized LOC100812014
gma-u.5	100782341	uncharacterized LOC100782341
vvi-u.5	100250204	uncharacterized LOC100250204
vvi-u.5	100244412	uncharacterized LOC100244412
ppo-u.5	7497854	uncharacterized LOC7497854
ppo-u.5	18094454	uncharacterized LOC18094454
mtr-u.5	25502199	uncharacterized LOC25502199
mtr-u.5	11432212	uncharacterized LOC11432212
sly-u.5	101253024	uncharacterized LOC101253024
sly-u.5	101253920	uncharacterized LOC101253920
sot-r.1	102583789	uncharacterized LOC102583789
sot-r.1	107059976	uncharacterized LOC107059976
nta-r.1	107827457	uncharacterized LOC107827457
nta-r.1	107760276	uncharacterized LOC107760276
nta-r.1	107782121	uncharacterized LOC107782121
osa-u.5	4324293	uncharacterized LOC4324293
osa-u.5	4338182	uncharacterized LOC4338182
zma-u.5	100280956	WW domain-binding protein 11
zma-u.5	103635707	Glycine-rich protein family
tae-r.2	123077893	nascent polypeptide-associated complex subunit alpha, muscle-specific form
tae-r.2	123069397	basic proline-rich protein-like
tae-r.2	123060821	proline-rich protein 36
hvu-r.1	123443278	basic proline-rich protein-like
sbi-r.1	8058289	uncharacterized LOC8058289
sbi-r.1	8078090	ras-associated and pleckstrin homology domains-containing protein 1
bdi-r.1	100843037	transcription initiation factor TFIID subunit 4
bdi-r.1	100836024	uncharacterized LOC100836024

Top 50 coexpressed genes to AT4G23930 (ath-m.4.hor coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT4G23930 (ath-m.4.hor coexpression data)

CoexMap"828493"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005576 [list] [network] extracellular region

(3158 genes)

ISM

GO MF

Protein

NP_194124.1 [sequence] [blastp]
NP_974603.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9, mito 1, vacu 1	(predict for NP_194124.1)
chlo 10	(predict for NP_974603.1)

Subcellular
localization
TargetP

scret 9	(predict for NP_194124.1)
scret 9	(predict for NP_974603.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.hor for AT4G23930	ath-u.5 for AT4G23930	ath-r.7 for AT4G23930	ath-m.9 for AT4G23930	ath-e.2 for AT4G23930	ath-m.4.bio for AT4G23930	ath-m.4.lig for AT4G23930	ath-m.4.str for AT4G23930	ath-m.4.tis for AT4G23930	ath-u.5 for AT1G64450	bra-r.6 for 103838166	bra-r.6 for 103861449	bra-r.6 for 103861549	bna-r.1 for 125593409	bna-r.1 for BNAA03G46360D	bna-r.1 for 106416178	ghi-r.1 for 121203555	ghi-r.1 for 107947131	ghi-r.1 for 107950768	cit-r.1 for 102630845	gma-u.5 for 100820289	gma-u.5 for 100812014	gma-u.5 for 100782341	vvi-u.5 for 100250204	vvi-u.5 for 100244412	ppo-u.5 for 7497854	ppo-u.5 for 18094454	mtr-u.5 for 25502199	mtr-u.5 for 11432212	sly-u.5 for 101253024	sly-u.5 for 101253920	sot-r.1 for 102583789	sot-r.1 for 107059976	nta-r.1 for 107827457	nta-r.1 for 107760276	nta-r.1 for 107782121	osa-u.5 for 4324293	osa-u.5 for 4338182	zma-u.5 for 100280956	zma-u.5 for 103635707	tae-r.2 for 123077893	tae-r.2 for 123069397	tae-r.2 for 123060821	hvu-r.1 for 123443278	sbi-r.1 for 8058289	sbi-r.1 for 8078090	bdi-r.1 for 100843037	bdi-r.1 for 100836024

Ortholog

Ortholog ID: 4108

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family

Glycine-rich protein family

collagen alpha-1(III) chain

uncharacterized LOC103861449

uncharacterized LOC103861549

uncharacterized LOC106416178

collagen alpha-5(IV) chain

uncharacterized LOC106407691

uncharacterized LOC121203555

uncharacterized LOC107947131

uncharacterized LOC107951176

uncharacterized LOC102630845

uncharacterized LOC100820289

uncharacterized LOC100782341

uncharacterized LOC100776169

uncharacterized LOC100250204

uncharacterized LOC100244412

uncharacterized LOC7497854

uncharacterized LOC18094454

uncharacterized LOC25502199

uncharacterized LOC11432212

uncharacterized LOC101253024

uncharacterized LOC101253920

uncharacterized LOC102583789

uncharacterized LOC107059976

uncharacterized LOC107827457

uncharacterized LOC107760276

uncharacterized LOC107782121

uncharacterized LOC4324293

uncharacterized LOC4338182

WW domain-binding protein 11

Glycine-rich protein family

nascent polypeptide-associated complex subunit alpha, muscle-specific form

basic proline-rich protein-like

proline-rich protein 36

basic proline-rich protein-like

uncharacterized LOC8058289

ras-associated and pleckstrin homology domains-containing protein 1

transcription initiation factor TFIID subunit 4

uncharacterized LOC100836024

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	5
bra04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00940	Phenylpropanoid biosynthesis	4
bna00941	Flavonoid biosynthesis	4
bna00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00940	Phenylpropanoid biosynthesis	4
bna00941	Flavonoid biosynthesis	4
bna00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04145	Phagosome	2
ghi04148	Efferocytosis	2
ghi04517	IgSF CAM signaling	2
ghi04518	Integrin signaling	2
ghi04620	Toll-like receptor signaling pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04145	Phagosome	2
ghi04148	Efferocytosis	2
ghi04517	IgSF CAM signaling	2
ghi04518	Integrin signaling	2
ghi04620	Toll-like receptor signaling pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00053	Ascorbate and aldarate metabolism	2
gma00520	Amino sugar and nucleotide sugar metabolism	2
gma01240	Biosynthesis of cofactors	2
gma01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00270	Cysteine and methionine metabolism	5
sot00670	One carbon pool by folate	5
sot00940	Phenylpropanoid biosynthesis	3
sot01230	Biosynthesis of amino acids	3
sot00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04145	Phagosome	2
nta04517	IgSF CAM signaling	2
nta04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2
nta03022	Basal transcription factors	2
nta00030	Pentose phosphate pathway	2
nta00480	Glutathione metabolism	2
nta01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04075	Plant hormone signal transduction	3

Expression

Expression pattern

Entrez Gene ID^*

828493

842753

103838166

103861449

103861549

106416178

106366467

106407691

121203555

107947131

107951176

102630845

100820289

100782341

100776169

100250204

100244412

7497854

18094454

25502199

11432212

101253024

101253920

102583789

107059976

107827457

107760276

107782121

4324293

4338182

100280956

103635707

123077893

123069397

123060821

123443278

8058289

8078090

100843037

100836024

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	10	3	3	3	1	3	2	2	2	2	2	3	2	2	3	1	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT4G23930 (ath-m.4.hor coexpression data)

Top 50 enrichment test to AT4G23930 (ath-m.4.hor coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**